ENSDARG00000035808


Danio rerio

Features
Gene ID: ENSDARG00000035808
  
Biological name :clcn4
  
Synonyms : chloride channel, voltage-sensitive 4 / clcn4
  
Possible biological names infered from orthology : chloride voltage-gated channel 4 / Mus musculus chloride channel, voltage-sensitive 4 (Clcn4), transcript variant 7, mRNA. / P51793 / Q61418
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 44144612
Gene end: 44163164
  
Corresponding Affymetrix probe sets: Dr.7965.1.A1_at (Zebrafish Array)   NM_001077318_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047125
NCBI entrez gene - 768175     See in Manteia.
RefSeq - NM_001077318
RefSeq Peptide - NP_001070786
swissprot - F1QXH5
ZFIN ID - ZDB-GENE-061013-353
Ensembl - ENSDARG00000035808
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLCN4ENSGALG00000016607Gallus gallus
 CLCN4ENSG00000073464Homo sapiens
 Clcn4ENSMUSG00000000605Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clcn5a / chloride channel, voltage-sensitive 5a / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000001969374
clcn3 / chloride channel 3 / P51790* / P51791* / chloride voltage-gated channel 3* / H(+)/Cl(-) exchange transporter 3 *ENSDARG0000000326974
clcn5b / chloride channel, voltage-sensitive 5b / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000002246672
clcn7 / chloride channel 7 / O70496* / P51798* / chloride voltage-gated channel 7* / H(+)/Cl(-) exchange transporter 7 *ENSDARG0000001955627
clcn6 / chloride channel 6 / O35454* / P51797* / Chloride transport protein 6 * / chloride voltage-gated channel 6*ENSDARG0000003257726
clcn1a / chloride channel, voltage-sensitive 1a / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000006208424
clcn2a / chloride channel, voltage-sensitive 2a / CLCN2* / Q9R0A1* / P51788* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006242724
clcn1b / chloride channel, voltage-sensitive 1b / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000001226923
clcn2c / chloride channel 2c / CLCN2* / P51788* / Q9R0A1* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006043920
clcnk / chloride channel K / P51801* / CLCNKA* / CLCNKB* / P51800* / chloride voltage-gated channel Ka* / chloride voltage-gated channel Kb*ENSDARG0000002256019


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR002246  Chloride channel ClC-4
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IBA


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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