ENSDARG00000060439


Danio rerio

Features
Gene ID: ENSDARG00000060439
  
Biological name :clcn2c
  
Synonyms : chloride channel 2c / clcn2c
  
Possible biological names infered from orthology : Chloride channel protein 2 / chloride voltage-gated channel 2 / CLCN2 / P51788 / Q9R0A1
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 46736794
Gene end: 46779934
  
Corresponding Affymetrix probe sets: Dr.18673.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000079571
NCBI entrez gene - 563453     See in Manteia.
RefSeq - NM_001319271
RefSeq Peptide - NP_001306200
swissprot - E7FCE2
ZFIN ID - ZDB-GENE-050506-73
Ensembl - ENSDARG00000060439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLCN2ENSGALG00000025804Gallus gallus
 CLCN2ENSG00000114859Homo sapiens
 Clcn2ENSMUSG00000022843Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clcn2a / chloride channel, voltage-sensitive 2a / CLCN2* / Q9R0A1* / P51788* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006242751
clcn1a / chloride channel, voltage-sensitive 1a / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000006208445
clcn1b / chloride channel, voltage-sensitive 1b / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000001226943
clcnk / chloride channel K / P51801* / CLCNKA* / CLCNKB* / P51800* / chloride voltage-gated channel Ka* / chloride voltage-gated channel Kb*ENSDARG0000002256026
clcn5a / chloride channel, voltage-sensitive 5a / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000001969320
clcn5b / chloride channel, voltage-sensitive 5b / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000002246620
clcn3 / chloride channel 3 / P51790* / P51791* / chloride voltage-gated channel 3* / H(+)/Cl(-) exchange transporter 3 *ENSDARG0000000326919
clcn4 / chloride channel, voltage-sensitive 4 / P51793* / chloride voltage-gated channel 4*ENSDARG0000003580819
clcn6 / chloride channel 6 / O35454* / P51797* / Chloride transport protein 6 * / chloride voltage-gated channel 6*ENSDARG0000003257718
clcn7 / chloride channel 7 / O70496* / P51798* / chloride voltage-gated channel 7* / H(+)/Cl(-) exchange transporter 7 *ENSDARG0000001955618


Protein motifs (from Interpro)
Interpro ID Name
 IPR001807  Chloride channel, voltage gated
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0055064 chloride ion homeostasis IMP
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IBA
 cellular_componentGO:0005622 intracellular IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IPI
 molecular_functionGO:0005247 voltage-gated chloride channel activity IBA


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
anatomical structure decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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