ENSG00000114859


Homo sapiens

Features
Gene ID: ENSG00000114859
  
Biological name :CLCN2
  
Synonyms : chloride voltage-gated channel 2 / CLCN2 / P51788
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q27.1
Gene start: 184346185
Gene end: 184361651
  
Corresponding Affymetrix probe sets: 213499_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400425
Ensembl peptide - ENSP00000490875
Ensembl peptide - ENSP00000490764
Ensembl peptide - ENSP00000490682
Ensembl peptide - ENSP00000490659
Ensembl peptide - ENSP00000490570
Ensembl peptide - ENSP00000490374
Ensembl peptide - ENSP00000490313
Ensembl peptide - ENSP00000490299
Ensembl peptide - ENSP00000489885
Ensembl peptide - ENSP00000489724
Ensembl peptide - ENSP00000265593
Ensembl peptide - ENSP00000345056
Ensembl peptide - ENSP00000391928
Ensembl peptide - ENSP00000396231
NCBI entrez gene - 1181     See in Manteia.
OMIM - 600570
RefSeq - XM_011512401
RefSeq - NM_001171087
RefSeq - NM_001171088
RefSeq - NM_001171089
RefSeq - NM_004366
RefSeq - XM_006713489
RefSeq - XM_006713490
RefSeq Peptide - NP_001164558
RefSeq Peptide - NP_001164559
RefSeq Peptide - NP_001164560
RefSeq Peptide - NP_004357
swissprot - A0A1B0GWC8
swissprot - A0A1B0GVU4
swissprot - A0A1B0GVL9
swissprot - A0A1B0GV52
swissprot - A0A1B0GUZ8
swissprot - A0A1B0GUY6
swissprot - A0A1B0GTJ3
swissprot - A0A1B0GTY0
swissprot - A0A1B0GVW7
swissprot - H7C0Q8
swissprot - P51788
Ensembl - ENSG00000114859
  
Related genetic diseases (OMIM): 607628 - {Epilepsy, idiopathic generalized, susceptibility to, 11}, 607628
  615651 - Leukoencephalopathy with ataxia, 615651
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clcn2aENSDARG00000062427Danio rerio
 clcn2cENSDARG00000060439Danio rerio
 CLCN2ENSGALG00000025804Gallus gallus
 Clcn2ENSMUSG00000022843Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLCN1 / P35523 / chloride voltage-gated channel 1ENSG0000018803752
CLCNKA / P51800 / chloride voltage-gated channel KaENSG0000018651034
CLCNKB / P51801 / chloride voltage-gated channel KbENSG0000018490834
CLCN5 / P51795 / chloride voltage-gated channel 5ENSG0000017136521
CLCN3 / P51790 / chloride voltage-gated channel 3ENSG0000010957221
CLCN4 / P51793 / chloride voltage-gated channel 4ENSG0000007346420
CLCN7 / P51798 / chloride voltage-gated channel 7ENSG0000010324920
CLCN6 / P51797 / chloride voltage-gated channel 6ENSG0000001102119


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR002244  Chloride channel ClC-2
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 biological_processGO:0060689 cell differentiation involved in salivary gland development IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000532 Chorioretinal abnormality 
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 HP:0001123 Visual field defects 
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 HP:0001138 Optic neuropathy 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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