ENSG00000188037


Homo sapiens

Features
Gene ID: ENSG00000188037
  
Biological name :CLCN1
  
Synonyms : chloride voltage-gated channel 1 / CLCN1 / P35523
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q34
Gene start: 143316126
Gene end: 143352083
  
Corresponding Affymetrix probe sets: 208437_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000339867
Ensembl peptide - ENSP00000395949
Ensembl peptide - ENSP00000400027
NCBI entrez gene - 1180     See in Manteia.
OMIM - 118425
RefSeq - XM_017011740
RefSeq - NM_000083
RefSeq - XM_017011739
RefSeq Peptide - NP_000074
swissprot - P35523
swissprot - H7C1F4
swissprot - H7C0N6
Ensembl - ENSG00000188037
  
Related genetic diseases (OMIM): 118425 - Myotonia levior, recessive
  160800 - Myotonia congenita, dominant, 160800
  255700 - Myotonia congenita, recessive, 255700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clcn1aENSDARG00000062084Danio rerio
 clcn1bENSDARG00000012269Danio rerio
 CLCN1ENSGALG00000014695Gallus gallus
 Clcn1ENSMUSG00000029862Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLCN2 / P51788 / chloride voltage-gated channel 2ENSG0000011485948
CLCNKB / P51801 / chloride voltage-gated channel KbENSG0000018490829
CLCNKA / P51800 / chloride voltage-gated channel KaENSG0000018651028
CLCN3 / P51790 / chloride voltage-gated channel 3ENSG0000010957219
CLCN6 / P51797 / chloride voltage-gated channel 6ENSG0000001102118
CLCN7 / P51798 / chloride voltage-gated channel 7ENSG0000010324918
CLCN5 / P51795 / chloride voltage-gated channel 5ENSG0000017136518
CLCN4 / P51793 / chloride voltage-gated channel 4ENSG0000007346417


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR002243  Chloride channel ClC-1
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0006936 muscle contraction IMP
 biological_processGO:0019227 neuronal action potential propagation IEA
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0034765 regulation of ion transmembrane transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0034707 chloride channel complex IEA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0005244 voltage-gated ion channel activity IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IEA
 molecular_functionGO:0005254 chloride channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002486 Myotonia "Myotonia is characterized by an abnormally slow relaxation of the muscles after voluntary contraction or electrical stimulation. During physical examination, myotonia may be elicited by asking the patient to make a tight fist and then quickly open the hand." [HPO:curators]
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003552 Muscle stiffness 
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 HP:0003712 Muscle hypertrophy "Hypertrophy (increase in size) of muscle cells (as opposed to hyperplasia, which refers to an increase in the number of muscle cells)." [HPO:curators]
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 HP:0003730 EMG shows spontaneous, repetitive electrical activity ( myotonic runs ) 
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 HP:0003740 Myotonia improves with continued activity ( warm-up phenomenon ) 
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 HP:0003812 Phenotypic variability 
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 HP:0008968 Muscle hypertrophy of the lower extremities "Muscle hypertrophy primarily affecting the legs." [HPO:curators]
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 HP:0010548 Percussion myotonia "A localized myotonic contraction in a muscle in reaction to percussion (tapping with the examiner s finger, a rubber percussion hammer, or a similar object)." [HPO:curators]
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 HP:0011463 Childhood onset "Onset of disease at the age of between 1 and 5 years." [DDD:hfirth]
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 HP:0012899 Handgrip myotonia "Difficulty releasing one s grip associated with prolonged first handgrip relaxation times." [pmid:22987687, UToronto:htrang]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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