ENSG00000171365


Homo sapiens

Features
Gene ID: ENSG00000171365
  
Biological name :CLCN5
  
Synonyms : chloride voltage-gated channel 5 / CLCN5 / P51795
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: p11.23
Gene start: 49922615
Gene end: 50099235
  
Corresponding Affymetrix probe sets: 206704_at (Human Genome U133 Plus 2.0 Array)   226273_at (Human Genome U133 Plus 2.0 Array)   226274_at (Human Genome U133 Plus 2.0 Array)   232127_at (Human Genome U133 Plus 2.0 Array)   232128_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496353
Ensembl peptide - ENSP00000304257
Ensembl peptide - ENSP00000365256
Ensembl peptide - ENSP00000365259
Ensembl peptide - ENSP00000365276
Ensembl peptide - ENSP00000496632
Ensembl peptide - ENSP00000476732
Ensembl peptide - ENSP00000495122
Ensembl peptide - ENSP00000496056
NCBI entrez gene - 1184     See in Manteia.
OMIM - 300008
RefSeq - XM_017029258
RefSeq - NM_000084
RefSeq - NM_001127898
RefSeq - NM_001127899
RefSeq - NM_001272102
RefSeq - NM_001282163
RefSeq - XM_017029257
RefSeq Peptide - NP_000075
RefSeq Peptide - NP_001121370
RefSeq Peptide - NP_001269092
RefSeq Peptide - NP_001121371
RefSeq Peptide - NP_001259031
swissprot - P51795
swissprot - V9GYG7
Ensembl - ENSG00000171365
  
Related genetic diseases (OMIM): 300009 - Dent disease, 300009
  300554 - Hypophosphatemic rickets, 300554
  308990 - Proteinuria, low molecular weight, with hypercalciuric nephrocalcinosis, 308990
  310468 - Nephrolithiasis, type I, 310468
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clcn5aENSDARG00000019693Danio rerio
 clcn5bENSDARG00000022466Danio rerio
 CLCN5ENSGALG00000007234Gallus gallus
 Clcn5ENSMUSG00000004317Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CLCN3 / P51790 / chloride voltage-gated channel 3ENSG0000010957272
CLCN4 / P51793 / chloride voltage-gated channel 4ENSG0000007346472
CLCN7 / P51798 / chloride voltage-gated channel 7ENSG0000010324927
CLCN6 / P51797 / chloride voltage-gated channel 6ENSG0000001102126
CLCN2 / P51788 / chloride voltage-gated channel 2ENSG0000011485923
CLCN1 / P35523 / chloride voltage-gated channel 1ENSG0000018803722
CLCNKA / P51800 / chloride voltage-gated channel KaENSG0000018651019
CLCNKB / P51801 / chloride voltage-gated channel KbENSG0000018490819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR002247  Chloride channel ClC-5
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0007588 excretion TAS
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045177 apical part of cell IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IEA
 molecular_functionGO:0005254 chloride channel activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0015297 antiporter activity TAS
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000083 Renal failure 
Show

 HP:0000092 Tubular atrophy 
Show

 HP:0000096 Glomerulosclerosis 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000114 Proximal renal tubule defect 
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 HP:0000117 Decreased renal tubular phosphate reabsorption 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000787 Kidney stones 
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
Show

 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
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 HP:0002150 Hypercalciuria 
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 HP:0002653 Bone pain 
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 HP:0002663 Late ossifying epiphyses 
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 HP:0002748 Rickets 
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 HP:0002749 Osteomalacia "Osteomalacia is a general term for bone weakness owing to a defect in mineralization of the protein framework known as osteoid. This defective mineralization is mainly caused by lack in vitamin D. Osteomalacia in children is known as rickets." [HPO:curators]
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 HP:0002752 Sparse bone trabeculae 
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 HP:0002753 Thin bony cortex "Abnormal thinning of the cortical region of bones." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002907 Microscopic hematuria 
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 HP:0002979 Bowing of the legs 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0003013 Bulging epiphyses 
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 HP:0003020 Enlargement of the wrists 
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 HP:0003025 Irregular metaphyses 
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 HP:0003029 Enlargement of the ankles 
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 HP:0003076 Glycosuria "The excretion of abnormal amounts of glucose in the urine, generally resulting in osmotic diuresis." [HPO:curators]
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 HP:0003109 Hyperphosphaturia "An increased excretion of phosphates in the urine." [HPO:curators]
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 HP:0003126 Low-molecular-weight proteinuria 
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 HP:0003152 Increased serum 1,25-dihydroxyvitamin D3 
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003677 Slow progression 
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004912 hypophosphatemic rickets 
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 HP:0005576 Tubulointerstitial fibrosis 
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 HP:0010502 Fibular bowing "A developmental defect with posteromedial fibular angulation." [HPO:curators]
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 HP:0012622 Chronic kidney disease "Functional anomaly of the kidney persisting for at least three months." [Eurenomics:ewuehl]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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