ENSDARG00000003269


Danio rerio

Features
Gene ID: ENSDARG00000003269
  
Biological name :clcn3
  
Synonyms : chloride channel 3 / clcn3
  
Possible biological names infered from orthology : chloride voltage-gated channel 3 / H(+)/Cl(-) exchange transporter 3 / P51790 / P51791
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 7511914
Gene end: 7643941
  
Corresponding Affymetrix probe sets: Dr.10303.1.A1_at (Zebrafish Array)   Dr.10303.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000049310
Ensembl peptide - ENSDARP00000142496
Ensembl peptide - ENSDARP00000142446
Ensembl peptide - ENSDARP00000142439
NCBI entrez gene - 559340     See in Manteia.
swissprot - A0A140LGW7
swissprot - A0A140LGR7
swissprot - A0A140LGR0
swissprot - F1R7J9
ZFIN ID - ZDB-GENE-030131-1699
Ensembl - ENSDARG00000003269
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CLCN3ENSGALG00000009674Gallus gallus
 CLCN3ENSG00000109572Homo sapiens
 Clcn3ENSMUSG00000004319Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clcn5a / chloride channel, voltage-sensitive 5a / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000001969366
clcn4 / chloride channel, voltage-sensitive 4 / P51793* / chloride voltage-gated channel 4*ENSDARG0000003580865
clcn5b / chloride channel, voltage-sensitive 5b / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000002246663
clcn7 / chloride channel 7 / O70496* / P51798* / chloride voltage-gated channel 7* / H(+)/Cl(-) exchange transporter 7 *ENSDARG0000001955625
clcn6 / chloride channel 6 / O35454* / P51797* / Chloride transport protein 6 * / chloride voltage-gated channel 6*ENSDARG0000003257724
clcn2a / chloride channel, voltage-sensitive 2a / CLCN2* / Q9R0A1* / P51788* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006242722
clcn1b / chloride channel, voltage-sensitive 1b / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000001226921
clcn1a / chloride channel, voltage-sensitive 1a / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000006208421
clcn2c / chloride channel 2c / CLCN2* / P51788* / Q9R0A1* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006043918
clcnk / chloride channel K / P51801* / CLCNKA* / CLCNKB* / P51800* / chloride voltage-gated channel Ka* / chloride voltage-gated channel Kb*ENSDARG0000002256018


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR002245  Chloride channel ClC-3
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr