ENSDARG00000022560


Danio rerio

Features
Gene ID: ENSDARG00000022560
  
Biological name :clcnk
  
Synonyms : chloride channel K / clcnk
  
Possible biological names infered from orthology : Chloride channel protein ClC-Ka / Chloride channel protein ClC-Kb / chloride voltage-gated channel Ka / chloride voltage-gated channel Kb / CLCNKA / CLCNKB / P51800 / P51801 / Q9WUB6 / Q9WUB7
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 24272421
Gene end: 24291927
  
Corresponding Affymetrix probe sets: Dr.20874.1.S1_at (Zebrafish Array)   NM_200382_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000030506
NCBI entrez gene - 393353     See in Manteia.
RefSeq - NM_200382
RefSeq Peptide - NP_956676
swissprot - F1QAS1
ZFIN ID - ZDB-GENE-040426-1379
Ensembl - ENSDARG00000022560
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000003713Gallus gallus
 CLCNKAENSG00000186510Homo sapiens
 CLCNKBENSG00000184908Homo sapiens
 ClcnkaENSMUSG00000033770Mus musculus
 ClcnkbENSMUSG00000006216Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
clcn2a / chloride channel, voltage-sensitive 2a / CLCN2* / Q9R0A1* / P51788* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006242734
clcn1a / chloride channel, voltage-sensitive 1a / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000006208433
clcn1b / chloride channel, voltage-sensitive 1b / CLCN1* / Q64347* / P35523* / Chloride channel protein 1 * / chloride voltage-gated channel 1*ENSDARG0000001226932
clcn2c / chloride channel 2c / CLCN2* / P51788* / Q9R0A1* / Chloride channel protein 2 * / chloride voltage-gated channel 2*ENSDARG0000006043930
clcn5a / chloride channel, voltage-sensitive 5a / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000001969323
clcn5b / chloride channel, voltage-sensitive 5b / CLCN5* / P51795* / Q9WVD4* / chloride voltage-gated channel 5* / H(+)/Cl(-) exchange transporter 5 *ENSDARG0000002246623
clcn3 / chloride channel 3 / P51790* / P51791* / chloride voltage-gated channel 3* / H(+)/Cl(-) exchange transporter 3 *ENSDARG0000000326923
clcn7 / chloride channel 7 / O70496* / P51798* / chloride voltage-gated channel 7* / H(+)/Cl(-) exchange transporter 7 *ENSDARG0000001955621
clcn4 / chloride channel, voltage-sensitive 4 / P51793* / chloride voltage-gated channel 4*ENSDARG0000003580821
clcn6 / chloride channel 6 / O35454* / P51797* / Chloride transport protein 6 * / chloride voltage-gated channel 6*ENSDARG0000003257719


Protein motifs (from Interpro)
Interpro ID Name
 IPR000644  CBS domain
 IPR001807  Chloride channel, voltage gated
 IPR014743  Chloride channel, core


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005247 voltage-gated chloride channel activity IBA


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr