ENSDARG00000036254


Danio rerio

Features
Gene ID: ENSDARG00000036254
  
Biological name :hoxa13b
  
Synonyms : homeobox A13b / hoxa13b / P79724
  
Possible biological names infered from orthology : homeobox A13 / homeobox protein Hox-A13 / HOXA13 / P31271
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 20895904
Gene end: 20897836
  
Corresponding Affymetrix probe sets: Dr.15718.1.S1_at (Zebrafish Array)   NM_131194_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052661
NCBI entrez gene - 30438     See in Manteia.
RefSeq - NM_131194
RefSeq Peptide - NP_571269
swissprot - P79724
ZFIN ID - ZDB-GENE-980526-365
Ensembl - ENSDARG00000036254
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA13ENSGALG00000027234Gallus gallus
 HOXA13ENSG00000106031Homo sapiens
 Hoxa13ENSMUSG00000038203Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031275
Q1ECY2 / hoxb13a / homeobox B13aENSDARG0000005601564
hoxc13a / homeobox C13a / P50207* / HOXC13* / P31276* / homeobox C13* / Homeobox protein Hox-C13 *ENSDARG0000007035356
Q6JIY4 / hoxc13b / homeobox C13b / HOXC13* / P31276* / homeobox C13*ENSDARG0000011387748
Q90472 / hoxd13a / homeobox D13a / HOXD13* / P35453* / P70217* / homeobox D13* / Homeobox protein Hox-D13 *ENSDARG0000005925635
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035124
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785921
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263121
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416221
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602320
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927420
hoxc9a / homeobox C9a / HOXC9* / P09633* / P31274* / homeobox C9* / Homeobox protein Hox-C9 *ENSDARG0000009280920
hoxa11b / homeobox A11b / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000000700920
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035220
hoxc10a / homeobox C10a / Q9NYD6* / HOXC10* / P31257* / homeobox C10* / Homeobox protein Hox-C10 *ENSDARG0000007034820
hoxa10b / homeobox A10bENSDARG0000003133720
Q90470 / hoxd11a / homeobox D11a / HOXD11* / P31277* / homeobox D11*ENSDARG0000005926720
hoxa9a / Q9PWL6 / homeobox A9a / HOXA9* / P09631* / P31269* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010501319
Q90471 / hoxd12a / homeobox D12a / HOXD12* / P23812* / P35452* / homeobox D12* / Homeobox protein Hox-D12 *ENSDARG0000005926318
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681918


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR022067  Homeobox protein Hox1A3 N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000135 notochord notochord posterior side disorganized , abnormal
Show

 ZFA:0000243 neuromast neuromast absent , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
Show

 ZFA:0009091 melanocyte melanocyte disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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