ENSG00000106031


Homo sapiens

Features
Gene ID: ENSG00000106031
  
Biological name :HOXA13
  
Synonyms : homeobox A13 / HOXA13 / P31271
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p15.2
Gene start: 27193503
Gene end: 27200106
  
Corresponding Affymetrix probe sets: 231786_at (Human Genome U133 Plus 2.0 Array)   238571_at (Human Genome U133 Plus 2.0 Array)   238808_at (Human Genome U133 Plus 2.0 Array)   243058_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000222753
NCBI entrez gene - 3209     See in Manteia.
OMIM - 142959
RefSeq - NM_000522
RefSeq Peptide - NP_000513
swissprot - P31271
Ensembl - ENSG00000106031
  
Related genetic diseases (OMIM): 140000 - Hand-foot-uterus syndrome, 140000
  176305 - Guttmacher syndrome, 176305

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P79724ENSDARG00000036254Danio rerio
 Q6W990ENSDARG00000100312Danio rerio
 HOXA13ENSGALG00000027234Gallus gallus
 Hoxa13ENSMUSG00000038203Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXC13 / P31276 / homeobox C13ENSG0000012336443
HOXD13 / P35453 / homeobox D13ENSG0000012871440
HOXB13 / Q92826 / homeobox B13ENSG0000015918439
HOXC10 / Q9NYD6 / homeobox C10ENSG0000018081817
HOXD11 / P31277 / homeobox D11ENSG0000012871317
HOXD12 / P35452 / homeobox D12ENSG0000017017816
HOXA10 / P31260 / homeobox A10ENSG0000025329316
HOXC11 / O43248 / homeobox C11ENSG0000012338816
HOXA11 / P31270 / homeobox A11ENSG0000000507316
HOXC9 / P31274 / homeobox C9ENSG0000018080616
HOXB9 / P17482 / homeobox B9ENSG0000017068915
HOXC12 / P31275 / homeobox C12ENSG0000012340715
HOXD9 / P28356 / homeobox D9ENSG0000012870915
HOXA9 / P31269 / homeobox A9ENSG0000007839915
HOXD10 / P28358 / homeobox D10ENSG0000012871014
AC004080.3ENSG0000025718411


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR022067  Homeobox protein Hox1A3 N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0043565 sequence-specific DNA binding IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000010 Recurrent urinary tract infections "Repeated infections of the urinary tract." [HPO:curators]
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 HP:0000041 Chordee "A condition in which the head of the penis curves downward." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000807 Glandular hypospadias 
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 HP:0000813 Bicornuate uterus 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001216 Delayed maturation/delayed ossification of carpal bones 
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 HP:0001245 Thenar hypoplasia "Underdevelopment of the thenar eminence." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001885 Brachydactyly (2nd-5th toes) 
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 HP:0003762 Uterus didelphys 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005048 fusion of carpal bones, especially capitate and hamate 
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 HP:0005268 Increased risk of spontaneous abortion 
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 HP:0006110 Disproportionately short middle phalanges 
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 HP:0007477 Abnormal dermatoglyphics "An abnormality of dermatoglyphs (fingerprints), which are present on fingers, palms, toes, and soles." [HPO:curators]
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 HP:0008080 Hallux varus "Medial deviation of the great toe owing to a deformity of the great toe joint causing the hallux to deviate medially." [HPO:curators]
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 HP:0008103 Delayed tarsal ossification 
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 HP:0008551 Underdeveloped ears 
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 HP:0008740 Longitudinal vaginal septum "The presence of a longitudinal vaginal septum, thereby creating a vaginal duplication." [HPO:curators]
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 HP:0009237 Hypoplastic/small 5th finger "Hypoplastic/small 5th (little) finger." [HPO:curators]
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 HP:0009464 Ulnar deviation of the 2nd finger "Displacement of the 2nd (index) finger towards the ulnar side." [HPO:curators]
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 HP:0009623 Proximally placed thumb "Proximally displaced thumb." [HPO:curators]
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010034 Hypoplastic/short 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
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 HP:0010105 Hypoplastic/short 1st metatarsal 
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 HP:0010109 Hypoplastic/small hallux 
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 HP:0010584 Pseudoepiphyses 
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 HP:0011937 Hypoplastic fifth toenail "Underdeveloped nails of the fifth toes." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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