ENSG00000128714


Homo sapiens

Features
Gene ID: ENSG00000128714
  
Biological name :HOXD13
  
Synonyms : homeobox D13 / HOXD13 / P35453
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q31.1
Gene start: 176092891
Gene end: 176095938
  
Corresponding Affymetrix probe sets: 207397_s_at (Human Genome U133 Plus 2.0 Array)   207398_at (Human Genome U133 Plus 2.0 Array)   236681_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000376322
NCBI entrez gene - 3239     See in Manteia.
OMIM - 142989
RefSeq - NM_000523
RefSeq Peptide - NP_000514
swissprot - P35453
Ensembl - ENSG00000128714
  
Related genetic diseases (OMIM): 113200 - Brachydactyly, type D, 113200
  113300 - Brachydactyly, type E, 113300
  186000 - Synpolydactyly 1, 186000
  186300 - Syndactyly, type V, 186300
  610713 - ?Brachydactyly-syndactyly syndrome, 610713

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q90472ENSDARG00000059256Danio rerio
 HOXD13ENSGALG00000032039Gallus gallus
 Hoxd13ENSMUSG00000001819Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXA13 / P31271 / homeobox A13ENSG0000010603145
HOXC13 / P31276 / homeobox C13ENSG0000012336443
HOXB13 / Q92826 / homeobox B13ENSG0000015918436
HOXC10 / Q9NYD6 / homeobox C10ENSG0000018081818
HOXD12 / P35452 / homeobox D12ENSG0000017017817
HOXA11 / P31270 / homeobox A11ENSG0000000507317
HOXD11 / P31277 / homeobox D11ENSG0000012871317
HOXA10 / P31260 / homeobox A10ENSG0000025329317
HOXD10 / P28358 / homeobox D10ENSG0000012871017
HOXC11 / O43248 / homeobox C11ENSG0000012338817
HOXB9 / P17482 / homeobox B9ENSG0000017068916
HOXC12 / P31275 / homeobox C12ENSG0000012340716
HOXA9 / P31269 / homeobox A9ENSG0000007839916
HOXD9 / P28356 / homeobox D9ENSG0000012870916
HOXC9 / P31274 / homeobox C9ENSG0000018080616
AC004080.3ENSG0000025718412


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR022067  Homeobox protein Hox1A3 N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated TAS
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0022612 gland morphogenesis IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0030539 male genitalia development IEA
 biological_processGO:0030850 prostate gland development IEA
 biological_processGO:0033574 response to testosterone IEA
 biological_processGO:0035108 limb morphogenesis IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048619 embryonic hindgut morphogenesis IEA
 biological_processGO:0060527 prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis IEA
 biological_processGO:0060571 morphogenesis of an epithelial fold IEA
 biological_processGO:0060602 branch elongation of an epithelium IEA
 biological_processGO:0060687 regulation of branching involved in prostate gland morphogenesis IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001158 enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IMP
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:1990837 sequence-specific double-stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000008 Abnormality of female internal genitalia 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000048 Bifid scrotum "Separation of the two halves of the scrotum, whereby commonly the 2 halves of the scrotum meet above the penis." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000104 Renal agenesis 
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 HP:0000110 Renal dysplasia 
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000453 Choanal atresia "Absence or abnormal closure of the choana (the posterior nasal aperture)." [HPO:curators]
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 HP:0000766 Abnormality of the sternum 
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 HP:0000772 Abnormality of the ribs 
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000894 Short clavicles 
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 HP:0001032 Aplasia of the distal interphalangeal creases "Absence of the distal interphalangeal flexion creases of the fingers." [HPO:curators]
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 HP:0001048 Cavernous hemangioma "The presence of a cavernous hemangioma. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001177 Preaxial polydactyly (hands) "Supernumerary digits located at the radial side of the hand. Polydactyly (supernumerary digits) involving the thumb occurs in many distinct forms of high variability and severity. Ranging from fleshy nubbins over varying degrees of partial duplication/splitting to completely duplicated or even triplicated thumbs or preaxial (on the radial side of the hand) supernumerary digits." [HPO:curators]
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 HP:0001195 Single umbilical artery 
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 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
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 HP:0001440 Synostosis involving metatarsal bones 
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 HP:0001501 6 metacarpals 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001539 Omphalocele 
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 HP:0001561 Polyhydramnios 
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 HP:0001571 Multiple impacted teeth 
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 HP:0001601 Laryngomalacia 
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 HP:0001602 Laryngeal stenosis 
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 HP:0001622 Premature birth 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001669 Transposition of the great vessels 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0001732 Abnormality of the pancreas 
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 HP:0001739 Abnormality of the nasopharynx 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001822 Hallux valgus "Lateral deviation of the great toe (i.e., in the direction of the little toe)." [HPO:curators]
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 HP:0001830 Postaxial polydactyly (feet) "Polydactyly of the foot most commonly refers to the presence of six toes on one foot. Postaxial polydactyly affects the lateral ray and the duplication may range from a well-formed articulated digit to a rudimentary digit." [HPO:curators]
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 HP:0001841 Preaxial polydactyly (feet) "This term applies for a wide variety of partial and/or complete duplications of the phalanges of the big toe (sometimes including the 1st metatarsal). A partial duplication can present itself on x-rays as a notched phalanx, bifid phalanx or a broadened phalanx. Polydactyly affecting the big toe is called preaxial or hallucal polydactyly of the feet." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002032 Esophageal atresia "A developmental defect resulting in complete obliteration of the lumen of the esophagus such that the esophagus ends in a blind pouch rather than connecting to the stomach." [HPO:curators]
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 HP:0002085 Occipital encephalocele 
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 HP:0002144 Tethered cord "During normal embryological development, the spinal cord first occupies the entire length of the vertebral column but goes on to assume a position at the level of L1 due to differential growth of the conus medullaris and the vertebral column. The filum terminale is a slender, threadlike structure that remains after the normal regression of the distal embryonic spinal cord and attaches the spinal cord to the coccyx. A tethered cord results if there is a thickened rope-like filum terminale which anchors the cord at the level of L2 or below, potentially causing neurologic signs owing to abnormal tension on the spinal cord." [HPO:curators]
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 HP:0002323 Anencephaly 
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 HP:0002414 Spina bifida "Incomplete closure of the embryonic neural tube, whereby some vertebral arches remain unfused and open." [HPO:curators]
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 HP:0002575 Tracheoesophageal fistula "An abnormal connection (fistula) between the esophagus and the trachea." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002777 Tracheal stenosis 
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 HP:0002974 Radioulnar synostosis "An abnormal osseous union (fusion) between the radius and the ulna." [HPO:curators]
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003422 Vertebral segmentation defects 
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 HP:0003468 Abnormalities of the vertebrae 
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 HP:0003745 Sporadic 
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 HP:0003974 Absent ossification/absence of radius 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004220 Hypoplastic/small middle phalanx of the 5th finger "Absence or underdevelopment (hypoplasia) of the middle phalanx of the little (5th) finger." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0004692 4-5 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes four and five." [HPO:sdoelken]
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 HP:0004704 short 4th and 5th metatarsals 
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 HP:0005107 Abnormality of the sacrum 
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 HP:0005108 Abnormality of the intervertebral disks 
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 HP:0005264 Abnormality of the gallbladder 
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 HP:0005627 Type D brachydactyly 
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 HP:0005692 Joint hyperflexibility 
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 HP:0005863 Type E brachydactyly 
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 HP:0005867 Fused fourth and fifth metacarpals 
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 HP:0006042 Y-shaped metacarpals "Y-shaped metacarpals are the result of a partial fusion of two metacarpal bones, with the two arms of the Y pointing in the distal direction. Y-shaped metacarpals may be seen in combination with polydactyly." [HPO:curators]
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 HP:0006097 3-4 finger syndactyly "`Syndactyly` (HP:0001159) with fusion of fingers three and four." [HPO:sdoelken]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0006159 Central polydactyly (hands) 
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 HP:0006185 Enlarged proximal interphalangeal joints 
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 HP:0006501 Aplasia/Hypoplasia of the radius "A small/hypoplastic or absent/aplastic radius." [HPO:curators]
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 HP:0006587 Long, straight clavicles 
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 HP:0006703 Aplasia/Hypoplasia of the lungs 
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 HP:0008083 2nd-5th toe middle phalangeal hypoplasia 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008848 Moderately short stature "A moderate degree of short stature." [HPO:curators]
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 HP:0008897 Growth retardation, progressive 
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 HP:0009185 Contracture of the proximal interphalangeal joint of the 5th finger "Chronic loss of joint motion of the proximal interphalangeal joint of the 5th finger due to structural changes in non-bony tissue." [HPO:curators]
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009473 Joint contractures involving the joints of the hand 
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 HP:0009577 Hypoplastic/small middle phalanx of the 2nd finger "Hypoplastic/small middle phalanx of the 2nd (index) finger." [HPO:curators]
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 HP:0009642 Broad distal phalanx of the thumb "Increased width of the distal phalanx of the thumb." [HPO:curators]
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 HP:0009701 Synostosis involving the metacarpal bones "Fusion involving two or more metacarpal bones (A synostosis of the first metacarpal and the proximal phalanx of the thumb can also be observed, note that the first metacarpal bone corresponds to a proximal phalanx)." [HPO:curators]
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 HP:0009702 Synostosis involving the carpal bones 
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 HP:0009773 Symphalangism affecting the phalanges of the hand "Fusion of two or more phalangeal bones of the hand." [HPO:curators]
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009779 3-4 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes three and four." [HPO:sdoelken]
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 HP:0009803 Hypoplastic/small phalanges of the hand 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010047 Hypoplastic/short 5th metacarpal 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010055 Broad hallux 
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 HP:0010076 Aplasia/Hypoplasia of the distal phalanx of the hallux 
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 HP:0010077 Broad distal phalanx of the hallux 
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 HP:0010479 Patent urachus "Persistence of the urachal canal resulting in a canal between the bladder and the umbilicus." [HPO:curators]
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 HP:0010554 Cutaneous syndactyly of the fingers "Webbing or fusion of the fingers involving soft parts only." [HPO:curators]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0012165 Oligodactyly "A developmental defect resulting in the presence of fewer than the normal number of digits." [HPO:probinson]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0100258 Preaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the thumb or great toe." [HPO:probinson]
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 HP:0100335 Non-midline cleft lip 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100560 Upper limb asymmetry 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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