ENSG00000180818


Homo sapiens

Features
Gene ID: ENSG00000180818
  
Biological name :HOXC10
  
Synonyms : homeobox C10 / HOXC10 / Q9NYD6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 53985065
Gene end: 53990279
  
Corresponding Affymetrix probe sets: 218959_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000307321
Ensembl peptide - ENSP00000421946
NCBI entrez gene - 3226     See in Manteia.
OMIM - 605560
RefSeq - NM_017409
RefSeq Peptide - NP_059105
swissprot - D6RAG4
swissprot - Q53XI4
swissprot - Q9NYD6
Ensembl - ENSG00000180818
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc10aENSDARG00000070348Danio rerio
 HOXC10ENSGALG00000029393Gallus gallus
 Hoxc10ENSMUSG00000022484Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXD10 / P28358 / homeobox D10ENSG0000012871044
HOXA10 / P31260 / homeobox A10ENSG0000025329342
HOXA9 / P31269 / homeobox A9ENSG0000007839926
HOXD9 / P28356 / homeobox D9ENSG0000012870925
HOXB9 / P17482 / homeobox B9ENSG0000017068925
HOXC9 / P31274 / homeobox C9ENSG0000018080624
HOXC12 / P31275 / homeobox C12ENSG0000012340720
HOXA13 / P31271 / homeobox A13ENSG0000010603120
HOXC11 / O43248 / homeobox C11ENSG0000012338820
HOXC13 / P31276 / homeobox C13ENSG0000012336419
HOXD11 / P31277 / homeobox D11ENSG0000012871319
HOXA11 / P31270 / homeobox A11ENSG0000000507319
HOXB13 / Q92826 / homeobox B13ENSG0000015918418
AC004080.3ENSG0000025718418
HOXD13 / P35453 / homeobox D13ENSG0000012871418
HOXD12 / P35452 / homeobox D12ENSG0000017017817


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008284 positive regulation of cell proliferation TAS
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009954 proximal/distal pattern formation IEA
 biological_processGO:0021520 spinal cord motor neuron cell fate specification IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0050905 neuromuscular process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016604 nuclear body IDA
 cellular_componentGO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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