ENSDARG00000070348


Danio rerio

Features
Gene ID: ENSDARG00000070348
  
Biological name :hoxc10a
  
Synonyms : homeobox C10a / hoxc10a
  
Possible biological names infered from orthology : homeobox C10 / Homeobox protein Hox-C10 / HOXC10 / P31257 / Q9NYD6
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 35969228
Gene end: 36086895
  
Corresponding Affymetrix probe sets: Dr.5728.1.A1_at (Zebrafish Array)   Dr.5728.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000147493
Ensembl peptide - ENSDARP00000156025
Ensembl peptide - ENSDARP00000053294
Ensembl peptide - ENSDARP00000111519
NCBI entrez gene - 100535576     See in Manteia.
RefSeq - NM_001254944
RefSeq Peptide - NP_001241873
swissprot - A2BE66
swissprot - F6NI81
ZFIN ID - ZDB-GENE-990415-110
Ensembl - ENSDARG00000070348
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC10ENSGALG00000029393Gallus gallus
 HOXC10ENSG00000180818Homo sapiens
 Hoxc10ENSMUSG00000022484Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785940
hoxa10b / homeobox A10bENSDARG0000003133737
hoxb10a / homeobox B10a / P31310* / HOXA10* / P31260* / homeobox A10* / Homeobox protein Hox-A10 *ENSDARG0000001157924
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927424
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602323
hoxa9a / Q9PWL6 / homeobox A9a / HOXA9* / P09631* / P31269* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010501323
hoxc9a / homeobox C9a / HOXC9* / P09633* / P31274* / homeobox C9* / Homeobox protein Hox-C9 *ENSDARG0000009280923
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681923
hoxa11b / homeobox A11b / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000000700921
Q90470 / hoxd11a / homeobox D11a / HOXD11* / P31277* / homeobox D11*ENSDARG0000005926720
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416220
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035219
hoxc12b / homeobox C12b / HOXC12* / P31275* / homeobox C12*ENSDARG0000010313319
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263119
hoxc13a / homeobox C13a / P50207* / HOXC13* / P31276* / homeobox C13* / Homeobox protein Hox-C13 *ENSDARG0000007035318
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035118
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031217
P79724 / hoxa13b / homeobox A13b / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000003625417
Q6JIY4 / hoxc13b / homeobox C13b / HOXC13* / P31276* / homeobox C13*ENSDARG0000011387716
Q90471 / hoxd12a / homeobox D12a / HOXD12* / P23812* / P35452* / homeobox D12* / Homeobox protein Hox-D12 *ENSDARG0000005926316


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr