ENSDARG00000059267


Danio rerio

Features
Gene ID: ENSDARG00000059267
  
Biological name :hoxd11a
  
Synonyms : homeobox D11a / hoxd11a / Q90470
  
Possible biological names infered from orthology : homeobox D11 / HOXD11 / P31277
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 1975818
Gene end: 1978090
  
Corresponding Affymetrix probe sets: Dr.5759.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000076780
NCBI entrez gene - 30405     See in Manteia.
RefSeq - NM_131167
RefSeq Peptide - NP_571242
swissprot - Q90470
ZFIN ID - ZDB-GENE-990415-117
Ensembl - ENSDARG00000059267
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXD11ENSGALG00000039629Gallus gallus
 HOXD11ENSG00000128713Homo sapiens
 Hoxd11ENSMUSG00000042499Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035157
hoxa11b / homeobox A11b / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000000700955
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416253
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263147
hoxc10a / homeobox C10a / Q9NYD6* / HOXC10* / P31257* / homeobox C10* / Homeobox protein Hox-C10 *ENSDARG0000007034825
hoxa10b / homeobox A10bENSDARG0000003133724
hoxc9a / homeobox C9a / HOXC9* / P09633* / P31274* / homeobox C9* / Homeobox protein Hox-C9 *ENSDARG0000009280923
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602323
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031222
hoxb10a / homeobox B10a / P31310* / HOXA10* / P31260* / homeobox A10* / Homeobox protein Hox-A10 *ENSDARG0000001157922
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681922
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785922
Q90471 / hoxd12a / homeobox D12a / HOXD12* / P23812* / P35452* / homeobox D12* / Homeobox protein Hox-D12 *ENSDARG0000005926321
P79724 / hoxa13b / homeobox A13b / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000003625421
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927421
Q1ECY2 / hoxb13a / homeobox B13aENSDARG0000005601520
hoxa9a / Q9PWL6 / homeobox A9a / HOXA9* / P09631* / P31269* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010501320
hoxc13a / homeobox C13a / P50207* / HOXC13* / P31276* / homeobox C13* / Homeobox protein Hox-C13 *ENSDARG0000007035320
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035220
hoxc12b / homeobox C12b / HOXC12* / P31275* / homeobox C12*ENSDARG0000010313319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR021918  Domain of unknown function DUF3528, homeobox protein, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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