ENSDARG00000105013


Danio rerio

Features
Gene ID: ENSDARG00000105013
  
Biological name :hoxa9a
  
Synonyms : homeobox A9a / hoxa9a / Q9PWL6
  
Possible biological names infered from orthology : AC004080.3 / homeobox A9 / Homeobox protein Hox-A9 / HOXA9 / P09631 / P31269
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 19747430
Gene end: 19752145
  
Corresponding Affymetrix probe sets: Dr.2821.1.A1_at (Zebrafish Array)   Dr.5730.1.S1_at (Zebrafish Array)   NM_131532_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000140324
Ensembl peptide - ENSDARP00000139889
NCBI entrez gene - 58047     See in Manteia.
RefSeq - NM_131532
RefSeq Peptide - NP_571607
swissprot - B2GSB0
swissprot - Q9PWL6
ZFIN ID - ZDB-GENE-000823-1
Ensembl - ENSDARG00000105013
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA9ENSGALG00000028983Gallus gallus
 AC004080.3ENSG00000257184Homo sapiens
 HOXA9ENSG00000078399Homo sapiens
 Hoxa9ENSMUSG00000038227Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CR382300.2 / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010035864
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602343
hoxc9a / homeobox C9a / HOXC9* / P09633* / P31274* / homeobox C9* / Homeobox protein Hox-C9 *ENSDARG0000009280942
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681941
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927439
hoxc10a / homeobox C10a / Q9NYD6* / HOXC10* / P31257* / homeobox C10* / Homeobox protein Hox-C10 *ENSDARG0000007034831
hoxa10b / homeobox A10bENSDARG0000003133730
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785930
hoxb10a / homeobox B10a / P31310* / HOXA10* / P31260* / homeobox A10* / Homeobox protein Hox-A10 *ENSDARG0000001157929
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263123
hoxa11b / homeobox A11b / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000000700923
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035123
Q90470 / hoxd11a / homeobox D11a / HOXD11* / P31277* / homeobox D11*ENSDARG0000005926722
Q90471 / hoxd12a / homeobox D12a / HOXD12* / P23812* / P35452* / homeobox D12* / Homeobox protein Hox-D12 *ENSDARG0000005926322
P79724 / hoxa13b / homeobox A13b / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000003625422
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416222
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035221
hoxc12b / homeobox C12b / HOXC12* / P31275* / homeobox C12*ENSDARG0000010313321
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031220
Q1ECY2 / hoxb13a / homeobox B13aENSDARG0000005601520


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006711  Hox9, N-terminal activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017112  Homeobox protein HXA9/HXB9/HXC9
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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