ENSDARG00000092809


Danio rerio

Features
Gene ID: ENSDARG00000092809
  
Biological name :hoxc9a
  
Synonyms : homeobox C9a / hoxc9a
  
Possible biological names infered from orthology : homeobox C9 / Homeobox protein Hox-C9 / HOXC9 / P09633 / P31274
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 36095260
Gene end: 36097488
  
Corresponding Affymetrix probe sets: Dr.5731.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000105244
NCBI entrez gene - 58043     See in Manteia.
swissprot - A2BE65
ZFIN ID - ZDB-GENE-000328-5
Ensembl - ENSDARG00000092809
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXC9ENSGALG00000029439Gallus gallus
 HOXC9ENSG00000180806Homo sapiens
 Hoxc9ENSMUSG00000036139Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927450
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602348
hoxa9a / Q9PWL6 / homeobox A9a / HOXA9* / P09631* / P31269* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010501339
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681939
hoxa10b / homeobox A10bENSDARG0000003133729
hoxc10a / homeobox C10a / Q9NYD6* / HOXC10* / P31257* / homeobox C10* / Homeobox protein Hox-C10 *ENSDARG0000007034829
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785928
hoxb10a / homeobox B10a / P31310* / HOXA10* / P31260* / homeobox A10* / Homeobox protein Hox-A10 *ENSDARG0000001157927
hoxa11b / homeobox A11b / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000000700925
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263123
Q90470 / hoxd11a / homeobox D11a / HOXD11* / P31277* / homeobox D11*ENSDARG0000005926723
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035123
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416223
P79724 / hoxa13b / homeobox A13b / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000003625422
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035222
Q1ECY2 / hoxb13a / homeobox B13aENSDARG0000005601521
hoxc13a / homeobox C13a / P50207* / HOXC13* / P31276* / homeobox C13* / Homeobox protein Hox-C13 *ENSDARG0000007035321
hoxc12b / homeobox C12b / HOXC12* / P31275* / homeobox C12*ENSDARG0000010313320
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031220
Q90471 / hoxd12a / homeobox D12a / HOXD12* / P23812* / P35452* / homeobox D12* / Homeobox protein Hox-D12 *ENSDARG0000005926320


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006711  Hox9, N-terminal activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017112  Homeobox protein HXA9/HXB9/HXC9
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005110 thoracic duct thoracic duct hypoplastic , abnormal
Show

 ZFA:0009395 vascular lymphangioblast vascular lymphangioblast hypoplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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