ENSGALG00000029439


Gallus gallus

Features
Gene ID: ENSGALG00000029439
  
Biological name :HOXC9
  
Synonyms : homeobox C9 / HOXC9
  
Possible biological names infered from orthology : Homeobox protein Hox-C9 / P09633 / P31274
  
Species: Gallus gallus
  
Chr. number: 33
Strand: 1
Band:
Gene start: 1034458
Gene end: 1037315
  
Corresponding Affymetrix probe sets: Gga.12699.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055289
Ensembl peptide - ENSGALP00000061293
NCBI entrez gene - 425723     See in Manteia.
RefSeq - NM_001277282
RefSeq Peptide - NP_001264211
swissprot - A0A1L1RR73
swissprot - A0A1D5PQW8
Ensembl - ENSGALG00000029439
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc9aENSDARG00000092809Danio rerio
 HOXC9ENSG00000180806Homo sapiens
 Hoxc9ENSMUSG00000036139Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXD9 / homeobox D9 / P28356* / P28357* / Homeobox protein Hox-D9 *ENSGALG0000002751354
HOXA9 / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSGALG0000002898349
HOXB9 / homeobox B9 / P17482* / P20615* / Homeobox protein Hox-B9 *ENSGALG0000000127646
HOXA10 / homeobox A10 / P31260* / P31310* / Homeobox protein Hox-A10 *ENSGALG0000002663134
HOXD10 / homeobox D10 / P28358* / P28359* / Homeobox protein Hox-D10 *ENSGALG0000000927033
HOXC10 / homeobox C10 / P31257* / Q9NYD6* / Homeobox protein Hox-C10 *ENSGALG0000002939331
HOXA11 / P31258 / Homeobox protein Hox-A11 / P31311* / P31270* / homeobox A11*ENSGALG0000004002125
HOXD11 / P24342 / Homeobox protein Hox-D11 / P31277* / homeobox D11*ENSGALG0000003962925
HOXC11 / homeobox C11 / O43248* / P31313* / Homeobox protein Hox-C11 *ENSGALG0000004241625
HOXA13 / homeobox protein Hox-A13 / P31271* / homeobox A13*ENSGALG0000002723423
HOXD12 / P24343 / Homeobox protein Hox-D12 / P23812* / P35452* / homeobox D12*ENSGALG0000000927423
HOXB13 / homeobox B13 / P70321* / Q92826* / Homeobox protein Hox-B13 *ENSGALG0000003315422
HOXD13 / homeobox protein Hox-D13 / P35453* / P70217* / homeobox D13*ENSGALG0000003203921
HOXC13 / homeobox C13 / P31276* / P50207* / Homeobox protein Hox-C13 *ENSGALG0000003608220
HOXC12 / homeobox C12 / P31275* / Q8K5B8* / Homeobox protein Hox-C12 *ENSGALG0000003327218


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006711  Hox9, N-terminal activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017112  Homeobox protein HXA9/HXB9/HXC9
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016235 aggresome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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