ENSG00000180806


Homo sapiens

Features
Gene ID: ENSG00000180806
  
Biological name :HOXC9
  
Synonyms : homeobox C9 / HOXC9 / P31274
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: 1
Band: q13.13
Gene start: 53994895
Gene end: 54003337
  
Corresponding Affymetrix probe sets: 231936_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000302836
Ensembl peptide - ENSP00000423861
NCBI entrez gene - 3225     See in Manteia.
OMIM - 142971
RefSeq - NM_006897
RefSeq Peptide - NP_008828
swissprot - A0A024RAZ6
swissprot - P31274
Ensembl - ENSG00000180806
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hoxc9aENSDARG00000092809Danio rerio
 HOXC9ENSGALG00000029439Gallus gallus
 Hoxc9ENSMUSG00000036139Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXD9 / P28356 / homeobox D9ENSG0000012870952
HOXB9 / P17482 / homeobox B9ENSG0000017068950
HOXA9 / P31269 / homeobox A9ENSG0000007839948
HOXA10 / P31260 / homeobox A10ENSG0000025329337
HOXD10 / P28358 / homeobox D10ENSG0000012871032
HOXC10 / Q9NYD6 / homeobox C10ENSG0000018081831
AC004080.3ENSG0000025718428
HOXD11 / P31277 / homeobox D11ENSG0000012871327
HOXA11 / P31270 / homeobox A11ENSG0000000507326
HOXC12 / P31275 / homeobox C12ENSG0000012340726
HOXC11 / O43248 / homeobox C11ENSG0000012338824
HOXD12 / P35452 / homeobox D12ENSG0000017017823
HOXA13 / P31271 / homeobox A13ENSG0000010603123
HOXD13 / P35453 / homeobox D13ENSG0000012871422
HOXC13 / P31276 / homeobox C13ENSG0000012336421
HOXB13 / Q92826 / homeobox B13ENSG0000015918420


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006711  Hox9, N-terminal activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017112  Homeobox protein HXA9/HXB9/HXC9
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016235 aggresome IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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