ENSG00000128709


Homo sapiens

Features
Gene ID: ENSG00000128709
  
Biological name :HOXD9
  
Synonyms : homeobox D9 / HOXD9 / P28356
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: q31.1
Gene start: 176122720
Gene end: 176124937
  
Corresponding Affymetrix probe sets: 205604_at (Human Genome U133 Plus 2.0 Array)   205605_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000249499
NCBI entrez gene - 3235     See in Manteia.
OMIM - 142982
RefSeq - NM_014213
RefSeq Peptide - NP_055028
swissprot - P28356
Ensembl - ENSG00000128709
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXD9ENSGALG00000027513Gallus gallus
 Hoxd9ENSMUSG00000043342Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HOXC9 / P31274 / homeobox C9ENSG0000018080639
HOXB9 / P17482 / homeobox B9ENSG0000017068934
HOXA9 / P31269 / homeobox A9ENSG0000007839934
HOXA10 / P31260 / homeobox A10ENSG0000025329329
HOXC10 / Q9NYD6 / homeobox C10ENSG0000018081825
HOXD10 / P28358 / homeobox D10ENSG0000012871023
HOXD11 / P31277 / homeobox D11ENSG0000012871322
AC004080.3ENSG0000025718420
HOXC11 / O43248 / homeobox C11ENSG0000012338819
HOXD12 / P35452 / homeobox D12ENSG0000017017819
HOXA11 / P31270 / homeobox A11ENSG0000000507319
HOXC12 / P31275 / homeobox C12ENSG0000012340718
HOXA13 / P31271 / homeobox A13ENSG0000010603117
HOXD13 / P35453 / homeobox D13ENSG0000012871416
HOXC13 / P31276 / homeobox C13ENSG0000012336416
HOXB13 / Q92826 / homeobox B13ENSG0000015918415


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006711  Hox9, N-terminal activation domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007338 single fertilization IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0008344 adult locomotory behavior IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0009954 proximal/distal pattern formation IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0030879 mammary gland development IEA
 biological_processGO:0035115 embryonic forelimb morphogenesis IEA
 biological_processGO:0035136 forelimb morphogenesis IEA
 biological_processGO:0035137 hindlimb morphogenesis IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048706 embryonic skeletal system development IEA
 biological_processGO:0048935 peripheral nervous system neuron development IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IDA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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