ENSDARG00000007009


Danio rerio

Features
Gene ID: ENSDARG00000007009
  
Biological name :hoxa11b
  
Synonyms : homeobox A11b / hoxa11b
  
Possible biological names infered from orthology : homeobox A11 / Homeobox protein Hox-A11 / HOXA11 / P31270 / P31311
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 20904754
Gene end: 20907378
  
Corresponding Affymetrix probe sets: Dr.10666.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000005174
swissprot - F1RBM6
ZFIN ID - ZDB-GENE-990415-4
Ensembl - ENSDARG00000007009
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HOXA11ENSGALG00000040021Gallus gallus
 HOXA11ENSG00000005073Homo sapiens
 Hoxa11ENSMUSG00000038210Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hoxa11a / homeobox A11a / P31311* / HOXA11* / P31270* / homeobox A11* / Homeobox protein Hox-A11 *ENSDARG0000010416268
Q90470 / hoxd11a / homeobox D11a / HOXD11* / P31277* / homeobox D11*ENSDARG0000005926754
Q58EL0 / hoxc11a / homeobox C11a / HOXC11* / O43248* / P31313* / homeobox C11* / Homeobox protein Hox-C11 *ENSDARG0000007035151
hoxc11b / homeobox C11b / HOXC11* / O43248* / homeobox C11*ENSDARG0000010263147
hoxc10a / homeobox C10a / Q9NYD6* / HOXC10* / P31257* / homeobox C10* / Homeobox protein Hox-C10 *ENSDARG0000007034825
Q90469 / hoxd10a / homeobox D10a / HOXD10* / P28358* / P28359* / homeobox D10* / Homeobox protein Hox-D10 *ENSDARG0000005785924
hoxc9a / homeobox C9a / HOXC9* / P09633* / P31274* / homeobox C9* / Homeobox protein Hox-C9 *ENSDARG0000009280924
hoxa10b / homeobox A10bENSDARG0000003133723
Q9PWM2 / hoxb9a / homeobox B9a / HOXB9* / P17482* / P20615* / homeobox B9* / Homeobox protein Hox-B9 *ENSDARG0000005602323
hoxb10a / homeobox B10a / P31310* / HOXA10* / P31260* / homeobox A10* / Homeobox protein Hox-A10 *ENSDARG0000001157922
hoxa9b / homeobox A9b / HOXA9* / P31269* / P09631* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000005681922
Q6W990 / hoxa13a / homeobox A13a / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000010031222
hoxd9a / Q9PWM6 / homeobox D9aENSDARG0000005927421
hoxc13a / homeobox C13a / P50207* / HOXC13* / P31276* / homeobox C13* / Homeobox protein Hox-C13 *ENSDARG0000007035321
hoxa9a / Q9PWL6 / homeobox A9a / HOXA9* / P09631* / P31269* / AC004080.3* / homeobox A9* / Homeobox protein Hox-A9 *ENSDARG0000010501320
P79724 / hoxa13b / homeobox A13b / HOXA13* / P31271* / homeobox A13* / homeobox protein Hox-A13 *ENSDARG0000003625420
Q1ECY2 / hoxb13a / homeobox B13aENSDARG0000005601519
hoxc12a / homeobox C12a / Q8K5B8* / HOXC12* / P31275* / homeobox C12* / Homeobox protein Hox-C12 *ENSDARG0000007035219
hoxc12b / homeobox C12b / HOXC12* / P31275* / homeobox C12*ENSDARG0000010313319
Q6JIY4 / hoxc13b / homeobox C13b / HOXC13* / P31276* / homeobox C13*ENSDARG0000011387718


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR021918  Domain of unknown function DUF3528, homeobox protein, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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