ENSDARG00000038072


Danio rerio

Features
Gene ID: ENSDARG00000038072
  
Biological name :ptx4
  
Synonyms : pentraxin 4, long / ptx4
  
Possible biological names infered from orthology : pentraxin 4 / pentraxin-4 isoform 2 / Q96A99
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 27642078
Gene end: 27663447
  
Corresponding Affymetrix probe sets: Dr.3605.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000055499
swissprot - F1RAX6
ZFIN ID - ZDB-GENE-120215-70
Ensembl - ENSDARG00000038072
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTX4ENSG00000251692Homo sapiens
 Ptx4ENSMUSG00000044172Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nptx1l / neuronal pentraxin 1 like / NPTX1* / Q15818* / neuronal pentraxin 1*ENSDARG0000007467119
nptxrb / neuronal pentraxin receptor bENSDARG0000005337518
nptxra / neuronal pentraxin receptor aENSDARG0000004043017
si:dkey-14o18.2ENSDARG0000006299517
nptx2b / neuronal pentraxin IIb / NPTX2* / O70340* / P47972* / neuronal pentraxin 2*ENSDARG0000004516416
nptx2a / neuronal pentraxin 2a / NPTX2* / P47972* / neuronal pentraxin 2*ENSDARG0000003779416
si:dkey-283b15.2ENSDARG0000004138216
ptx3a / pentraxin 3, long a / PTX3* / P48759* / P26022* / pentraxin 3* / Pentraxin-related protein PTX3 *ENSDARG0000006827512
ptx3b / pentraxin 3, long b / PTX3* / P48759* / P26022* / pentraxin 3* / Pentraxin-related protein PTX3 *ENSDARG0000007951511
crp2 / crp3 / C-reactive protein 2ENSDARG0000004261310
crp2 / C-reactive protein 2ENSDARG000000564629
crp7 / C-reactive protein 7ENSDARG000000714569
crp6 / C-reactive protein 6ENSDARG000000714579
crp / crp2 / c-reactive protein, pentraxin-relatedENSDARG000000564989
crp1 / C-reactive protein 1ENSDARG000000714548
si:ch211-270n8.1 / CRP* / APCS* / Mptx2* / Mptx1* / P12246* / P14847* / P02741* / P02743* / C-reactive protein* / mucosal pentraxin 2* / serum amyloid P-component* / amyloid P component, serum*ENSDARG000000450897
si:ch211-234p6.9ENSDARG000000957304


Protein motifs (from Interpro)
Interpro ID Name
 IPR001759  Pentraxin-related
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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