ENSDARG00000045089


Danio rerio

Features
Gene ID: ENSDARG00000045089
  
Biological name :si:ch211-270n8.1
  
Synonyms : si:ch211-270n8.1
  
Possible biological names infered from orthology : amyloid P component, serum / APCS / C-reactive protein / CRP / Mptx1 / Mptx2 / mucosal pentraxin 2 / P02741 / P02743 / P12246 / P14847 / serum amyloid P-component
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 20379392
Gene end: 20381485
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121591
NCBI entrez gene - 792467     See in Manteia.
RefSeq - XM_001331753
RefSeq - XM_021480782
swissprot - F1R6R2
ZFIN ID - ZDB-GENE-081107-34
Ensembl - ENSDARG00000045089
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000039887Gallus gallus
 CRPENSGALG00000022137Gallus gallus
 APCSENSG00000132703Homo sapiens
 CRPENSG00000132693Homo sapiens
 ApcsENSMUSG00000026542Mus musculus
 CrpENSMUSG00000037942Mus musculus
 Mptx1ENSMUSG00000026531Mus musculus
 Mptx2ENSMUSG00000079180Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
crp / crp2 / c-reactive protein, pentraxin-relatedENSDARG0000005649821
ptx3b / pentraxin 3, long b / PTX3* / P48759* / P26022* / pentraxin 3* / Pentraxin-related protein PTX3 *ENSDARG0000007951521
crp7 / C-reactive protein 7ENSDARG0000007145620
si:dkey-283b15.2ENSDARG0000004138220
crp6 / C-reactive protein 6ENSDARG0000007145720
nptx1l / neuronal pentraxin 1 like / NPTX1* / Q15818* / neuronal pentraxin 1*ENSDARG0000007467120
si:dkey-14o18.2ENSDARG0000006299520
nptx2b / neuronal pentraxin IIb / NPTX2* / O70340* / P47972* / neuronal pentraxin 2*ENSDARG0000004516420
crp2 / C-reactive protein 2ENSDARG0000005646219
crp1 / C-reactive protein 1ENSDARG0000007145419
nptxrb / neuronal pentraxin receptor bENSDARG0000005337519
nptx2a / neuronal pentraxin 2a / NPTX2* / P47972* / neuronal pentraxin 2*ENSDARG0000003779419
crp2 / crp3 / C-reactive protein 2ENSDARG0000004261318
ptx3a / pentraxin 3, long a / PTX3* / P48759* / P26022* / pentraxin 3* / Pentraxin-related protein PTX3 *ENSDARG0000006827517
nptxra / neuronal pentraxin receptor aENSDARG0000004043016
ptx4 / pentraxin 4, long / Q96A99* / pentraxin 4* / pentraxin-4 isoform 2 *ENSDARG0000003807214
si:ch211-234p6.9ENSDARG0000009573011


Protein motifs (from Interpro)
Interpro ID Name
 IPR001759  Pentraxin-related
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Classical antibody-mediated complement activation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr