ENSDARG00000045904


Danio rerio

Features
Gene ID: ENSDARG00000045904
  
Biological name :nr2e3
  
Synonyms : nr2e3 / nuclear receptor subfamily 2, group E, member 3
  
Possible biological names infered from orthology : Photoreceptor-specific nuclear receptor / Q9QXZ7 / Q9Y5X4
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 22274642
Gene end: 22278655
  
Corresponding Affymetrix probe sets: Dr.7861.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000111061
NCBI entrez gene - 492496     See in Manteia.
RefSeq - NM_001007368
RefSeq Peptide - NP_001007369
swissprot - F1QGF3
ZFIN ID - ZDB-GENE-041114-63
Ensembl - ENSDARG00000045904
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NR2E3ENSGALG00000002093Gallus gallus
 NR2E3ENSG00000278570Homo sapiens
 Nr2e3ENSMUSG00000032292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nr2e1 / nuclear receptor subfamily 2, group E, member 1 / Q64104* / Q9Y466*ENSDARG0000001710741
nr2f5 / Q06726 / nuclear receptor subfamily 2, group F, member 5ENSDARG0000003317235
nr2f6a / nuclear receptor subfamily 2, group F, member 6a / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*ENSDARG0000000360734
Q06725 / nr2f1a / nuclear receptor subfamily 2, group F, member 1a / NR2F1* / P10589* / nuclear receptor subfamily 2 group F member 1*ENSDARG0000005269534
nr2f2 / nuclear receptor subfamily 2, group F, member 2 / P24468* / P43135*ENSDARG0000004092634
nr2f1b / Q6PH18 / nuclear receptor subfamily 2, group F, member 1bENSDARG0000001716833
nr2f6b / nuclear receptor subfamily 2, group F, member 6b / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*ENSDARG0000000316533
rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000005773731
rxrbb / retinoid x receptor, beta b / RXRB* / P28702* / P28704* / retinoid X receptor beta*ENSDARG0000000200630
rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *ENSDARG0000000469729
nr2c2 / nuclear receptor subfamily 2, group C, member 2 / P49116* / P49117*ENSDARG0000004247729
rxrba / Q7SYN5 / retinoid x receptor, beta a / RXRB* / P28704* / P28702* / retinoid X receptor beta*ENSDARG0000007895429
hnf4a / hepatocyte nuclear factor 4, alpha / P41235* / P49698*ENSDARG0000002149429
rxrab / retinoid x receptor, alpha b / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000003512729
hnf4g / hepatocyte nuclear factor 4, gamma / Q14541*ENSDARG0000007156528
nr2c1 / nuclear receptor subfamily 2, group C, member 1 / P13056* / Q505F1*ENSDARG0000004552726
CABZ01057488.1ENSDARG0000010474221


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021982 pineal gland development IMP
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001359 pineal complex pineal complex has fewer parts of type pineal complex photoreceptor cell, abnormal
pineal complex photoreceptor cell fate specification decreased occurrence , abnormal
pineal complex decreased amount , abnormal
Show

 ZFA:0001360 parapineal organ parapineal organ has extra parts of type parapineal organ neuron, abnormal
parapineal organ neuron fate specification increased occurrence , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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