ENSG00000278570


Homo sapiens

Features
Gene ID: ENSG00000278570
  
Biological name :NR2E3
  
Synonyms : NR2E3 / nuclear receptor subfamily 2 group E member 3 / Q9Y5X4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: 1
Band: q23
Gene start: 71792638
Gene end: 71818259
  
Corresponding Affymetrix probe sets: 208385_at (Human Genome U133 Plus 2.0 Array)   208388_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000479254
Ensembl peptide - ENSP00000479962
Ensembl peptide - ENSP00000482504
NCBI entrez gene - 10002     See in Manteia.
OMIM - 604485
RefSeq - NM_014249
RefSeq - NM_016346
RefSeq Peptide - NP_055064
RefSeq Peptide - NP_057430
swissprot - Q9Y5X4
swissprot - Q8IVZ9
swissprot - F1D8Q9
Ensembl - ENSG00000278570
  
Related genetic diseases (OMIM): 268100 - Enhanced S-cone syndrome, 268100
  611131 - Retinitis pigmentosa 37, 611131

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr2e3ENSDARG00000045904Danio rerio
 NR2E3ENSGALG00000002093Gallus gallus
 Nr2e3ENSMUSG00000032292Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR2E1 / Q9Y466 / nuclear receptor subfamily 2 group E member 1ENSG0000011233342
NR2F6 / P10588 / nuclear receptor subfamily 2 group F member 6ENSG0000016011337
NR2F2 / P24468 / nuclear receptor subfamily 2 group F member 2ENSG0000018555136
NR2F1 / P10589 / nuclear receptor subfamily 2 group F member 1ENSG0000017574536
RXRA / P19793 / retinoid X receptor alphaENSG0000018635034
RXRB / P28702 / retinoid X receptor betaENSG0000020423133
RXRG / P48443 / retinoid X receptor gammaENSG0000014317132
NR2C1 / P13056 / nuclear receptor subfamily 2 group C member 1ENSG0000012079830
NR2C2 / P49116 / nuclear receptor subfamily 2 group C member 2ENSG0000017746330
HNF4A / P41235 / hepatocyte nuclear factor 4 alphaENSG0000010107630
HNF4G / Q14541 / hepatocyte nuclear factor 4 gammaENSG0000016474929


Protein motifs (from Interpro)
Interpro ID Name
 IPR000003  Retinoid X receptor/HNF4
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0007602 phototransduction TAS
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0042462 eye photoreceptor cell development IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045872 positive regulation of rhodopsin gene expression IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0060041 retina development in camera-type eye IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IC
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IC
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity TAS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000550 Abolished electroretinogram (ERG) 
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 HP:0000552 Blue-yellow dyschromatopsia 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000642 Red-green dyschromatopsia 
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 HP:0000648 Optic atrophy 
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 HP:0000655 Vitreoretinal degeneration 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000969 Edema "An abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body. Edema may be related to one or more of the following factors: 1) increased capillary hydrostatic pressure, 2) decreased osmotic pressure of plasma, 3) decreased tissue tension and lymphatic drainage, 4) increased osmotic pressure of tissue fluids, and 5) increased capillary permeability." [HPO:curators]
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007688 Absent rod-and cone-mediated responses on ERG 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008028 Cystoid macular degeneration 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0012047 Hemeralopia "A visual defect characterized by the inability to see as clearly in bright light as in dim light. The word hemeralopia literally means day blindness." [HPO:probinson]
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 HP:0030502 Retinoschisis "Splitting of the neuroretinal layers of the retina." [HPO:probinson]
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 HP:0040049 Macular edema 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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