ENSG00000101076


Homo sapiens

Features
Gene ID: ENSG00000101076
  
Biological name :HNF4A
  
Synonyms : hepatocyte nuclear factor 4 alpha / HNF4A / P41235
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.12
Gene start: 44355700
Gene end: 44434596
  
Corresponding Affymetrix probe sets: 208429_x_at (Human Genome U133 Plus 2.0 Array)   214832_at (Human Genome U133 Plus 2.0 Array)   214851_at (Human Genome U133 Plus 2.0 Array)   216889_s_at (Human Genome U133 Plus 2.0 Array)   230772_at (Human Genome U133 Plus 2.0 Array)   230914_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000476310
Ensembl peptide - ENSP00000412111
Ensembl peptide - ENSP00000476609
Ensembl peptide - ENSP00000481331
Ensembl peptide - ENSP00000312987
Ensembl peptide - ENSP00000315180
Ensembl peptide - ENSP00000362011
Ensembl peptide - ENSP00000396216
Ensembl peptide - ENSP00000410911
NCBI entrez gene - 3172     See in Manteia.
OMIM - 600281
RefSeq - XM_005260407
RefSeq - NM_000457
RefSeq - NM_001030003
RefSeq - NM_001030004
RefSeq - NM_001258355
RefSeq - NM_001287182
RefSeq - NM_001287183
RefSeq - NM_001287184
RefSeq - NM_175914
RefSeq - NM_178849
RefSeq - NM_178850
RefSeq Peptide - NP_787110
RefSeq Peptide - NP_849180
RefSeq Peptide - NP_849181
RefSeq Peptide - NP_000448
RefSeq Peptide - NP_001025174
RefSeq Peptide - NP_001025175
RefSeq Peptide - NP_001245284
RefSeq Peptide - NP_001274111
RefSeq Peptide - NP_001274112
RefSeq Peptide - NP_001274113
swissprot - P41235
swissprot - A0A087WXV4
swissprot - F1D8T1
swissprot - F8WBS7
swissprot - B9VVT8
swissprot - F1D8S2
swissprot - F1D8T0
Ensembl - ENSG00000101076
  
Related genetic diseases (OMIM): 125850 - MODY, type I, 125850
  125853 - {Diabetes mellitus, noninsulin-dependent}, 125853
  616026 - Fanconi renotubular syndrome 4, with maturity-onset diabetes of the young, 616026

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnf4aENSDARG00000021494Danio rerio
 HNF4AENSGALG00000004285Gallus gallus
 Hnf4aENSMUSG00000017950Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNF4G / Q14541 / hepatocyte nuclear factor 4 gammaENSG0000016474968
RXRB / P28702 / retinoid X receptor betaENSG0000020423131
RXRA / P19793 / retinoid X receptor alphaENSG0000018635031
RXRG / P48443 / retinoid X receptor gammaENSG0000014317131
NR2F6 / P10588 / nuclear receptor subfamily 2 group F member 6ENSG0000016011329
NR2F1 / P10589 / nuclear receptor subfamily 2 group F member 1ENSG0000017574527
NR2F2 / P24468 / nuclear receptor subfamily 2 group F member 2ENSG0000018555127
NR2E3 / Q9Y5X4 / nuclear receptor subfamily 2 group E member 3ENSG0000027857026
NR2C2 / P49116 / nuclear receptor subfamily 2 group C member 2ENSG0000017746325
NR2C1 / P13056 / nuclear receptor subfamily 2 group C member 1ENSG0000012079825
NR2E1 / Q9Y466 / nuclear receptor subfamily 2 group E member 1ENSG0000011233325


Protein motifs (from Interpro)
Interpro ID Name
 IPR000003  Retinoid X receptor/HNF4
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IMP
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006591 ornithine metabolic process IMP
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006805 xenobiotic metabolic process IMP
 biological_processGO:0007548 sex differentiation IEA
 biological_processGO:0007596 blood coagulation IDA
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 biological_processGO:0009749 response to glucose ISS
 biological_processGO:0010470 regulation of gastrulation IEA
 biological_processGO:0019216 regulation of lipid metabolic process IDA
 biological_processGO:0023019 signal transduction involved in regulation of gene expression IEA
 biological_processGO:0030308 negative regulation of cell growth IMP
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0042593 glucose homeostasis ISS
 biological_processGO:0042632 cholesterol homeostasis ISS
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0050796 regulation of insulin secretion ISS
 biological_processGO:0055088 lipid homeostasis IMP
 biological_processGO:0055091 phospholipid homeostasis ISS
 biological_processGO:0060395 SMAD protein signal transduction IEA
 biological_processGO:0070328 triglyceride homeostasis ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding ISS
 molecular_functionGO:0001102 RNA polymerase II activating transcription factor binding ISS
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0005102 signaling receptor binding IDA
 molecular_functionGO:0005504 fatty acid binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000093 Proteinuria 
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 HP:0000104 Renal agenesis 
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 HP:0000121 Nephrocalcinosis 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000713 Agitation 
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 HP:0000813 Bicornuate uterus 
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 HP:0000819 Diabetes mellitus 
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 HP:0000821 Hypothyroidism 
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 HP:0000825 Hyperinsulinemic hypoglycemia 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000980 Pallor 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001369 Arthritis 
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 HP:0001397 Hepatic steatosis 
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 HP:0001520 Large for gestational age "The term large for gestational age applies to babies whose birth weight lies above the 90th percentile for that gestational age." [HPO:curators]
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 HP:0001649 Tachycardia "A rapid heartrate that exceeds the range of the normal resting heartrate for age." [HPO:curators]
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 HP:0001919 Acute renal failure 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001959 Polydipsia 
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 HP:0001985 Hypoketotic hypoglycemia 
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 HP:0001994 Renal Fanconi syndrome 
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 HP:0001998 Neonatal hypoglycemia 
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 HP:0002013 Vomiting 
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 HP:0002014 Diarrhea 
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 HP:0002021 Pyloric stenosis 
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 HP:0002149 Hyperuricemia "An abnormally high level of uric acid in the blood." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002329 Drowsiness 
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 HP:0002344 Progressive neurologic deterioration 
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 HP:0002748 Rickets 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003076 Glycosuria "The excretion of abnormal amounts of glucose in the urine, generally resulting in osmotic diuresis." [HPO:curators]
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 HP:0003109 Hyperphosphaturia "An increased excretion of phosphates in the urine." [HPO:curators]
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 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
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 HP:0003162 Fasting hypoglycemia 
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003537 Hypouricemia "An abnormally low level of uric acid in the blood." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004359 Abnormality of fatty-acid metabolism 
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 HP:0004510 Islets of Langerhans hyperplasia 
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 HP:0004904 Insulin-dependent maturity-onset diabetes of the young 
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 HP:0004912 hypophosphatemic rickets 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0005979 Metabolic ketoacidosis 
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 HP:0006568 Increased liver glycogen content 
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 HP:0009715 Papillary cystadenoma of the epididymis "Papillary cystadenomas of the epididymis are partially or completely cystic or solid lesions, between 1-3 cm in diameter and arise from the efferent duct epithelium of the head of epididymis." [HPO:curators]
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 HP:0012092 Abnormality of exocrine pancreas physiology "A functional anomaly of the acinar gland portion of the pancreas that secretes digestive enzymes." [HPO:probinson]
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 HP:0012093 Abnormality of endocrine pancreas physiology "A function abnormality of the endocrine pancreas." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012873 Absent vas deferens "Aplasia (congenital absence) of the vas deferens." [HPO:probinson]
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 HP:0100800 Aplasia/Hypoplasia of the pancreas "A congential underdevelopment (aplasia or hypoplasia) of the pancreas." [HPO:sdoelken]
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 HP:0100820 Glomerulopathy "Inflammatory or noninflammatory diseases affecting the glomeruli of the nephron." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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