ENSG00000175745


Homo sapiens

Features
Gene ID: ENSG00000175745
  
Biological name :NR2F1
  
Synonyms : NR2F1 / nuclear receptor subfamily 2 group F member 1 / P10589
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q15
Gene start: 93583224
Gene end: 93594615
  
Corresponding Affymetrix probe sets: 209505_at (Human Genome U133 Plus 2.0 Array)   209506_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495740
Ensembl peptide - ENSP00000325819
Ensembl peptide - ENSP00000481517
Ensembl peptide - ENSP00000495420
NCBI entrez gene - 7025     See in Manteia.
OMIM - 132890
RefSeq - NM_005654
RefSeq Peptide - NP_005645
swissprot - F1DAL7
swissprot - F1DAL9
swissprot - P10589
Ensembl - ENSG00000175745
  
Related genetic diseases (OMIM): 615722 - Bosch-Boonstra-Schaaf optic atrophy syndrome, 615722

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nr2f1aENSDARG00000052695Danio rerio
 NR2F1ENSGALG00000027907Gallus gallus
 Nr2f1ENSMUSG00000069171Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NR2F2 / P24468 / nuclear receptor subfamily 2 group F member 2ENSG0000018555186
NR2F6 / P10588 / nuclear receptor subfamily 2 group F member 6ENSG0000016011360
RXRA / P19793 / retinoid X receptor alphaENSG0000018635037
RXRB / P28702 / retinoid X receptor betaENSG0000020423136
NR2C2 / P49116 / nuclear receptor subfamily 2 group C member 2ENSG0000017746336
RXRG / P48443 / retinoid X receptor gammaENSG0000014317136
NR2E3 / Q9Y5X4 / nuclear receptor subfamily 2 group E member 3ENSG0000027857035
NR2C1 / P13056 / nuclear receptor subfamily 2 group C member 1ENSG0000012079834
NR2E1 / Q9Y466 / nuclear receptor subfamily 2 group E member 1ENSG0000011233333
HNF4A / P41235 / hepatocyte nuclear factor 4 alphaENSG0000010107630
HNF4G / Q14541 / hepatocyte nuclear factor 4 gammaENSG0000016474929


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type
 IPR035500  Nuclear hormone receptor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IDA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0007399 nervous system development IDA
 biological_processGO:0010977 negative regulation of neuron projection development IMP
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001078 transcriptional repressor activity, RNA polymerase II proximal promoter sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044323 retinoic acid-responsive element binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000543 Pale optic disks 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0001123 Visual field defects 
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0007663 Decreased central vision 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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