Manteia

ENSDARG00000003165

Danio rerio

Features

Gene ID:	ENSDARG00000003165

Biological name :	nr2f6b

Synonyms :	nr2f6b / nuclear receptor subfamily 2, group F, member 6b

Possible biological names infered from orthology :	NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588 / P43136

Species:	Danio rerio

Chr. number:	11
Strand:	1
Band:
Gene start:	6115621
Gene end:	6134583

Corresponding Affymetrix probe sets:	Dr.16181.1.A1_at (Zebrafish Array) NM_213239_at (Zebrafish Genome Array with custom cdf files)

Cross references:	Ensembl peptide - ENSDARP00000130719 Ensembl peptide - ENSDARP00000144340 Ensembl peptide - ENSDARP00000137164 Ensembl peptide - ENSDARP00000136646 Ensembl peptide - ENSDARP00000002435 NCBI entrez gene - 406522 See in Manteia. RefSeq - NM_213239 RefSeq - XM_021479586 RefSeq Peptide - NP_998404 swissprot - Q6P115 swissprot - A0A0R4IRI7 swissprot - A0A0R4IQB5 swissprot - A0A0J9YJ33 ZFIN ID - ZDB-GENE-040426-2351 Ensembl - ENSDARG00000003165

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
NR2F6	ENSGALG00000043010	Gallus gallus
NR2F6	ENSG00000160113	Homo sapiens
Nr2f6	ENSMUSG00000002393	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
nr2f6a / nuclear receptor subfamily 2, group F, member 6a / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*	ENSDARG00000003607	85
nr2f5 / Q06726 / nuclear receptor subfamily 2, group F, member 5	ENSDARG00000033172	62
nr2f1b / Q6PH18 / nuclear receptor subfamily 2, group F, member 1b	ENSDARG00000017168	62
nr2f2 / nuclear receptor subfamily 2, group F, member 2 / P24468* / P43135*	ENSDARG00000040926	62
Q06725 / nr2f1a / nuclear receptor subfamily 2, group F, member 1a / NR2F1* / P10589* / nuclear receptor subfamily 2 group F member 1*	ENSDARG00000052695	62
rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *	ENSDARG00000004697	35
nr2c2 / nuclear receptor subfamily 2, group C, member 2 / P49116* / P49117*	ENSDARG00000042477	35
nr2e3 / nuclear receptor subfamily 2, group E, member 3 / Q9QXZ7* / Q9Y5X4* / Photoreceptor-specific nuclear receptor *	ENSDARG00000045904	35
rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*	ENSDARG00000057737	35
rxrba / Q7SYN5 / retinoid x receptor, beta a / RXRB* / P28704* / P28702* / retinoid X receptor beta*	ENSDARG00000078954	34
rxrab / retinoid x receptor, alpha b / RXRA* / P19793* / P28700* / retinoid X receptor alpha*	ENSDARG00000035127	34
rxrbb / retinoid x receptor, beta b / RXRB* / P28702* / P28704* / retinoid X receptor beta*	ENSDARG00000002006	33
nr2c1 / nuclear receptor subfamily 2, group C, member 1 / P13056* / Q505F1*	ENSDARG00000045527	32
nr2e1 / nuclear receptor subfamily 2, group E, member 1 / Q64104* / Q9Y466*	ENSDARG00000017107	32
hnf4a / hepatocyte nuclear factor 4, alpha / P41235* / P49698*	ENSDARG00000021494	32
hnf4g / hepatocyte nuclear factor 4, gamma / Q14541*	ENSDARG00000071565	31
CABZ01057488.1	ENSDARG00000104742	24

Protein motifs (from Interpro)

Interpro ID	Name
IPR000536	Nuclear hormone receptor, ligand-binding domain
IPR001628	Zinc finger, nuclear hormone receptor-type
IPR001723	Nuclear hormone receptor
IPR003068	Transcription factor COUP
IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006351	transcription, DNA-templated	IEA
biological_process	GO:0006355	regulation of transcription, DNA-templated	IEA
biological_process	GO:0030522	intracellular receptor signaling pathway	IEA
biological_process	GO:0043401	steroid hormone mediated signaling pathway	IEA
cellular_component	GO:0005634	nucleus	IEA
molecular_function	GO:0003677	DNA binding	IEA
molecular_function	GO:0003700	DNA-binding transcription factor activity	IEA
molecular_function	GO:0003707	steroid hormone receptor activity	IEA
molecular_function	GO:0004879	nuclear receptor activity	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0043565	sequence-specific DNA binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

Nuclear Receptor transcription pathway

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr