ENSDARG00000003607


Danio rerio

Features
Gene ID: ENSDARG00000003607
  
Biological name :nr2f6a
  
Synonyms : nr2f6a / nuclear receptor subfamily 2, group F, member 6a
  
Possible biological names infered from orthology : NR2F6 / nuclear receptor subfamily 2 group F member 6 / P10588 / P43136
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 24374305
Gene end: 24386382
  
Corresponding Affymetrix probe sets: Dr.5385.1.A1_at (Zebrafish Array)   NM_205557_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119818
Ensembl peptide - ENSDARP00000009513
Ensembl peptide - ENSDARP00000115445
NCBI entrez gene - 325637     See in Manteia.
RefSeq - NM_205557
RefSeq - XM_005171224
RefSeq - XM_005171225
RefSeq - XM_021478933
RefSeq Peptide - NP_991120
swissprot - Q6P117
swissprot - F1QA67
swissprot - B0UXT4
ZFIN ID - ZDB-GENE-030131-4362
Ensembl - ENSDARG00000003607
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NR2F6ENSGALG00000043010Gallus gallus
 NR2F6ENSG00000160113Homo sapiens
 Nr2f6ENSMUSG00000002393Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nr2f6b / nuclear receptor subfamily 2, group F, member 6b / NR2F6* / P43136* / P10588* / nuclear receptor subfamily 2 group F member 6*ENSDARG0000000316586
nr2f5 / Q06726 / nuclear receptor subfamily 2, group F, member 5ENSDARG0000003317263
nr2f1b / Q6PH18 / nuclear receptor subfamily 2, group F, member 1bENSDARG0000001716863
Q06725 / nr2f1a / nuclear receptor subfamily 2, group F, member 1a / NR2F1* / P10589* / nuclear receptor subfamily 2 group F member 1*ENSDARG0000005269562
nr2f2 / nuclear receptor subfamily 2, group F, member 2 / P24468* / P43135*ENSDARG0000004092661
rxraa / retinoid X receptor, alpha a / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000005773737
nr2e3 / nuclear receptor subfamily 2, group E, member 3 / Q9QXZ7* / Q9Y5X4* / Photoreceptor-specific nuclear receptor *ENSDARG0000004590436
rxrab / retinoid x receptor, alpha b / RXRA* / P19793* / P28700* / retinoid X receptor alpha*ENSDARG0000003512735
rxrbb / retinoid x receptor, beta b / RXRB* / P28702* / P28704* / retinoid X receptor beta*ENSDARG0000000200635
rxrba / Q7SYN5 / retinoid x receptor, beta a / RXRB* / P28704* / P28702* / retinoid X receptor beta*ENSDARG0000007895435
nr2c2 / nuclear receptor subfamily 2, group C, member 2 / P49116* / P49117*ENSDARG0000004247735
rxrgb / Q6DHP9 / retinoid X receptor, gamma b / RXRG* / P28705* / P48443* / retinoid X receptor gamma* / Retinoic acid receptor RXR-gamma *ENSDARG0000000469734
nr2e1 / nuclear receptor subfamily 2, group E, member 1 / Q64104* / Q9Y466*ENSDARG0000001710733
hnf4a / hepatocyte nuclear factor 4, alpha / P41235* / P49698*ENSDARG0000002149432
hnf4g / hepatocyte nuclear factor 4, gamma / Q14541*ENSDARG0000007156531
nr2c1 / nuclear receptor subfamily 2, group C, member 1 / P13056* / Q505F1*ENSDARG0000004552731
CABZ01057488.1ENSDARG0000010474224


Protein motifs (from Interpro)
Interpro ID Name
 IPR000536  Nuclear hormone receptor, ligand-binding domain
 IPR001628  Zinc finger, nuclear hormone receptor-type
 IPR001723  Nuclear hormone receptor
 IPR003068  Transcription factor COUP
 IPR013088  Zinc finger, NHR/GATA-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030522 intracellular receptor signaling pathway IEA
 biological_processGO:0043401 steroid hormone mediated signaling pathway IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003707 steroid hormone receptor activity IEA
 molecular_functionGO:0004879 nuclear receptor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Nuclear Receptor transcription pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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