ENSDARG00000057105


Danio rerio

Features
Gene ID: ENSDARG00000057105
  
Biological name :nle1
  
Synonyms : nle1 / notchless homolog 1 (Drosophila)
  
Possible biological names infered from orthology : notchless homolog 1 / Notchless protein homolog 1 / Q8VEJ4 / Q9NVX2
  
Species: Danio rerio
  
Chr. number: 10
Strand: -1
Band:
Gene start: 23070741
Gene end: 23099869
  
Corresponding Affymetrix probe sets: Dr.21403.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000074155
Ensembl peptide - ENSDARP00000122687
Ensembl peptide - ENSDARP00000141676
NCBI entrez gene - 553606     See in Manteia.
RefSeq - NM_001328516
RefSeq - NM_001328517
RefSeq Peptide - NP_001315445
RefSeq Peptide - NP_001315446
swissprot - F1QDT3
ZFIN ID - ZDB-GENE-050522-321
Ensembl - ENSDARG00000057105
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000004691Gallus gallus
 ENSGALG00000036963Gallus gallus
 NLE1ENSG00000073536Homo sapiens
 Nle1ENSMUSG00000020692Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
daw1 / dynein assembly factor with WDR repeat domains 1 / Q8N136* / dynein assembly factor with WD repeats 1*ENSDARG0000002146223
pafah1b1b / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b / P43034* / PAFAH1B1* / platelet activating factor acetylhydrolase 1b regulatory subunit 1*ENSDARG0000002659522
Q7T394 / pafah1b1a / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a / P43034* / P63005* / PAFAH1B1* / platelet-activating factor acetylhydrolase, isoform 1b, subunit 1...ENSDARG0000003201322
wdr5 / WD repeat domain 5 / WDR5B* / Q9D7H2* / P61964* / P61965* / Q86VZ2* / WD repeat domain 5B*ENSDARG0000001690321
poc1b / A2CEH0 / POC1 centriolar protein B / Q8BHD1* / Q8TC44*ENSDARG0000002111018
snrnp40 / small nuclear ribonucleoprotein 40 (U5) / Q96DI7* / Q6PE01* / small nuclear ribonucleoprotein U5 subunit 40* / U5 small nuclear ribonucleoprotein 40 kDa protein *ENSDARG0000002316018
katnb1 / Q7ZUV2 / katanin p80 (WD repeat containing) subunit B 1 / Q9BVA0* / Q8BG40* / katanin regulatory subunit B1* / Katanin p80 WD40 repeat-containing subunit B1 *ENSDARG0000000545618
wdr61 / WD repeat domain 61 / Q9ERF3* / Q9GZS3*ENSDARG0000000775512
poc1a / POC1 centriolar protein A / Q8JZX3* / Q8NBT0*ENSDARG0000007853311
wdr38 / WD repeat domain 38 / Q5JTN6*ENSDARG0000004480111


Protein motifs (from Interpro)
Interpro ID Name
 IPR001632  G-protein, beta subunit
 IPR001680  WD40 repeat
 IPR012972  NLE
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0007219 Notch signaling pathway IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005840 ribosome IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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