ENSDARG00000005456


Danio rerio

Features
Gene ID: ENSDARG00000005456
  
Biological name :katnb1
  
Synonyms : katanin p80 (WD repeat containing) subunit B 1 / katnb1 / Q7ZUV2
  
Possible biological names infered from orthology : Katanin p80 WD40 repeat-containing subunit B1 / katanin regulatory subunit B1 / Q8BG40 / Q9BVA0
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 52158818
Gene end: 52285349
  
Corresponding Affymetrix probe sets: Dr.24204.1.A1_at (Zebrafish Array)   NM_213018_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000024623
Ensembl peptide - ENSDARP00000143087
Ensembl peptide - ENSDARP00000143077
Ensembl peptide - ENSDARP00000143025
NCBI entrez gene - 406291     See in Manteia.
RefSeq - NM_213018
RefSeq - XM_005166504
RefSeq - XM_005166505
RefSeq Peptide - NP_998183
swissprot - A0A1L1QZG7
swissprot - A0A1L1QZF5
swissprot - A0A1L1QZA4
swissprot - Q7ZUV2
ZFIN ID - ZDB-GENE-040426-1954
Ensembl - ENSDARG00000005456
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KATNB1ENSGALG00000034373Gallus gallus
 KATNB1ENSG00000140854Homo sapiens
 Katnb1ENSMUSG00000031787Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
poc1b / A2CEH0 / POC1 centriolar protein B / Q8BHD1* / Q8TC44*ENSDARG0000002111015
nle1 / notchless homolog 1 (Drosophila) / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSDARG0000005710512
pafah1b1b / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b / P43034* / PAFAH1B1* / platelet activating factor acetylhydrolase 1b regulatory subunit 1*ENSDARG0000002659512
daw1 / dynein assembly factor with WDR repeat domains 1 / Q8N136* / dynein assembly factor with WD repeats 1*ENSDARG0000002146212
Q7T394 / pafah1b1a / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a / P43034* / P63005* / PAFAH1B1* / platelet-activating factor acetylhydrolase, isoform 1b, subunit 1...ENSDARG0000003201311
snrnp40 / small nuclear ribonucleoprotein 40 (U5) / Q96DI7* / Q6PE01* / small nuclear ribonucleoprotein U5 subunit 40* / U5 small nuclear ribonucleoprotein 40 kDa protein *ENSDARG0000002316011
wdr5 / WD repeat domain 5 / WDR5B* / Q9D7H2* / P61964* / P61965* / Q86VZ2* / WD repeat domain 5B*ENSDARG0000001690311
wdr61 / WD repeat domain 61 / Q9ERF3* / Q9GZS3*ENSDARG0000000775510
poc1a / POC1 centriolar protein A / Q8JZX3* / Q8NBT0*ENSDARG000000785338
wdr38 / WD repeat domain 38 / Q5JTN6*ENSDARG000000448017


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR026962  Katanin p80 subunit B1
 IPR028021  Katanin p80 subunit, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007420 brain development IMP
 biological_processGO:0030901 midbrain development IMP
 biological_processGO:0051013 microtubule severing IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0000922 spindle pole ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle ISS
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0008352 katanin complex IEA
 molecular_functionGO:0008017 microtubule binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain decreased size , abnormal
brain agenesis , abnormal
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 ZFA:0000128 midbrain midbrain decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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