ENSGALG00000034373


Gallus gallus

Features
Gene ID: ENSGALG00000034373
  
Biological name :KATNB1
  
Synonyms : Katanin p80 WD40 repeat-containing subunit B1 / KATNB1 / Q5ZIU8
  
Possible biological names infered from orthology : katanin regulatory subunit B1 / Q8BG40 / Q9BVA0
  
Species: Gallus gallus
  
Chr. number: 11
Strand: -1
Band:
Gene start: 536140
Gene end: 553532
  
Corresponding Affymetrix probe sets: GgaAffx.12789.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049235
Ensembl peptide - ENSGALP00000059587
Ensembl peptide - ENSGALP00000057300
NCBI entrez gene - 415631     See in Manteia.
RefSeq - NM_001030559
RefSeq - XM_015292293
RefSeq Peptide - NP_001025730
swissprot - A0A1L1RLF9
swissprot - A0A1D5P935
swissprot - Q5ZIU8
Ensembl - ENSGALG00000034373
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 katnb1ENSDARG00000005456Danio rerio
 KATNB1ENSG00000140854Homo sapiens
 Katnb1ENSMUSG00000031787Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
POC1A / POC1 centriolar protein A / Q8JZX3* / Q8NBT0*ENSGALG0000003457215
POC1B / POC1 centriolar protein homolog B / Q8BHD1* / Q8TC44* / POC1 centriolar protein B*ENSGALG0000003549314
WDR61 / WD repeat-containing protein 61 / Q9ERF3* / Q9GZS3* / WD repeat domain 61*ENSGALG0000000322112
Q9PTR5 / PAFAH1B1 / Lissencephaly-1 homolog / P43034* / P63005* / platelet-activating factor acetylhydrolase, isoform 1b, subunit 1* / platelet activating factor acetylhydrolase 1b regulat...ENSGALG0000000583412
SNRNP40 / U5 small nuclear ribonucleoprotein 40 kDa protein / Q6PE01* / Q96DI7* / small nuclear ribonucleoprotein U5 subunit 40*ENSGALG0000000061511
DAW1 / dynein assembly factor with WD repeats 1 / Q8N136*ENSGALG0000000299211
WDR5 / WD repeat-containing protein 5 / WDR5B* / Q9D7H2* / P61964* / P61965* / Q86VZ2* / WD repeat domain 5* / WD repeat domain 5B*ENSGALG0000000265911
NLE1* / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSGALG000000046916
NLE1* / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSGALG000000369634


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR026962  Katanin p80 subunit B1
 IPR028021  Katanin p80 subunit, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007026 negative regulation of microtubule depolymerization IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0031117 positive regulation of microtubule depolymerization IEA
 biological_processGO:0051013 microtubule severing IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008352 katanin complex IEA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0030424 axon IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008568 microtubule-severing ATPase activity IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0070840 dynein complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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