ENSG00000140854


Homo sapiens

Features
Gene ID: ENSG00000140854
  
Biological name :KATNB1
  
Synonyms : katanin regulatory subunit B1 / KATNB1 / Q9BVA0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: q21
Gene start: 57735730
Gene end: 57757250
  
Corresponding Affymetrix probe sets: 203162_s_at (Human Genome U133 Plus 2.0 Array)   203163_at (Human Genome U133 Plus 2.0 Array)   229077_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457347
Ensembl peptide - ENSP00000457046
Ensembl peptide - ENSP00000457334
Ensembl peptide - ENSP00000368982
Ensembl peptide - ENSP00000455270
Ensembl peptide - ENSP00000455350
NCBI entrez gene - 10300     See in Manteia.
OMIM - 602703
RefSeq - XM_017022864
RefSeq - XM_006721122
RefSeq - XM_006721123
RefSeq - XM_011522810
RefSeq - XM_017022860
RefSeq - XM_017022861
RefSeq - XM_017022862
RefSeq - XM_017022863
RefSeq - NM_005886
RefSeq - XM_005255772
RefSeq - XM_006721121
RefSeq Peptide - NP_005877
swissprot - H3BT67
swissprot - H3BTU7
swissprot - H3BPK1
swissprot - H3BPD8
swissprot - Q9BVA0
swissprot - H3BTV8
Ensembl - ENSG00000140854
  
Related genetic diseases (OMIM): 616212 - Lissencephaly 6, with microcephaly, 616212
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 katnb1ENSDARG00000005456Danio rerio
 KATNB1ENSGALG00000034373Gallus gallus
 Katnb1ENSMUSG00000031787Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
POC1B / Q8TC44 / POC1 centriolar protein BENSG0000013932315
NLE1 / Q9NVX2 / notchless homolog 1ENSG0000007353614
POC1A / Q8NBT0 / POC1 centriolar protein AENSG0000016408714
DAW1 / Q8N136 / dynein assembly factor with WD repeats 1ENSG0000012397714
WDR61 / Q9GZS3 / WD repeat domain 61ENSG0000014039512
WDR38 / Q5JTN6 / WD repeat domain 38ENSG0000013691812
Q96DI7 / SNRNP40 / small nuclear ribonucleoprotein U5 subunit 40ENSG0000006068812
P43034 / PAFAH1B1 / platelet activating factor acetylhydrolase 1b regulatory subunit 1ENSG0000000716812
WDR5B / Q86VZ2 / WD repeat domain 5BENSG0000019698111
WDR5 / P61964 / WD repeat domain 5ENSG0000019636311


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR026962  Katanin p80 subunit B1
 IPR028021  Katanin p80 subunit, C-terminal
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting NAS
 biological_processGO:0007026 negative regulation of microtubule depolymerization IMP
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010942 positive regulation of cell death IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0031117 positive regulation of microtubule depolymerization IMP
 biological_processGO:0051013 microtubule severing IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0008352 katanin complex IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008017 microtubule binding NAS
 molecular_functionGO:0008568 microtubule-severing ATPase activity IDA
 molecular_functionGO:0046982 protein heterodimerization activity IPI
 molecular_functionGO:0070840 dynein complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002509 Limb hypertonia 
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 HP:0003593 Early onset 
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 HP:0009879 Cortical gyral simplification "An abnormal reduction of the number and complexity of the pattern of gyrations of the cerebral cortex." [HPO:curators]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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