ENSG00000060688


Homo sapiens

Features
Gene ID: ENSG00000060688
  
Biological name :SNRNP40
  
Synonyms : Q96DI7 / small nuclear ribonucleoprotein U5 subunit 40 / SNRNP40
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p35.2
Gene start: 31259568
Gene end: 31296782
  
Corresponding Affymetrix probe sets: 215905_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000263694
Ensembl peptide - ENSP00000362825
NCBI entrez gene - 9410     See in Manteia.
OMIM - 607797
RefSeq - NM_004814
RefSeq Peptide - NP_004805
swissprot - A0MNP2
swissprot - Q96DI7
swissprot - Q9NSS8
Ensembl - ENSG00000060688
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp40ENSDARG00000023160Danio rerio
 SNRNP40ENSGALG00000000615Gallus gallus
 Q6PE01ENSMUSG00000074088Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDR5B / Q86VZ2 / WD repeat domain 5BENSG0000019698129
WDR5 / P61964 / WD repeat domain 5ENSG0000019636328
NLE1 / Q9NVX2 / notchless homolog 1ENSG0000007353625
DAW1 / Q8N136 / dynein assembly factor with WD repeats 1ENSG0000012397725
POC1A / Q8NBT0 / POC1 centriolar protein AENSG0000016408724
P43034 / PAFAH1B1 / platelet activating factor acetylhydrolase 1b regulatory subunit 1ENSG0000000716824
POC1B / Q8TC44 / POC1 centriolar protein BENSG0000013932322
KATNB1 / Q9BVA0 / katanin regulatory subunit B1ENSG0000014085422
WDR38 / Q5JTN6 / WD repeat domain 38ENSG0000013691821
WDR61 / Q9GZS3 / WD repeat domain 61ENSG0000014039514


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions TAS
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing TAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005682 U5 snRNP TAS
 cellular_componentGO:0005732 small nucleolar ribonucleoprotein complex NAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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