ENSGALG00000000615


Gallus gallus

Features
Gene ID: ENSGALG00000000615
  
Biological name :SNRNP40
  
Synonyms : SNRNP40 / U5 small nuclear ribonucleoprotein 40 kDa protein
  
Possible biological names infered from orthology : Q6PE01 / Q96DI7 / small nuclear ribonucleoprotein U5 subunit 40
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 568349
Gene end: 579100
  
Corresponding Affymetrix probe sets: Gga.7711.2.S1_at (Chicken Array)   Gga.7711.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000061003
Ensembl peptide - ENSGALP00000040424
NCBI entrez gene - 419556     See in Manteia.
RefSeq - NM_001006308
RefSeq Peptide - NP_001006308
swissprot - F1NUK8
swissprot - A0A1L1RQD6
Ensembl - ENSGALG00000000615
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp40ENSDARG00000023160Danio rerio
 Q96DI7ENSG00000060688Homo sapiens
 Q6PE01ENSMUSG00000074088Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDR5 / WD repeat-containing protein 5 / WDR5B* / Q9D7H2* / P61964* / P61965* / Q86VZ2* / WD repeat domain 5* / WD repeat domain 5B*ENSGALG0000000265926
Q9PTR5 / PAFAH1B1 / Lissencephaly-1 homolog / P43034* / P63005* / platelet-activating factor acetylhydrolase, isoform 1b, subunit 1* / platelet activating factor acetylhydrolase 1b regulat...ENSGALG0000000583422
DAW1 / dynein assembly factor with WD repeats 1 / Q8N136*ENSGALG0000000299221
POC1B / POC1 centriolar protein homolog B / Q8BHD1* / Q8TC44* / POC1 centriolar protein B*ENSGALG0000003549320
POC1A / POC1 centriolar protein A / Q8JZX3* / Q8NBT0*ENSGALG0000003457220
KATNB1 / Q5ZIU8 / Katanin p80 WD40 repeat-containing subunit B1 / Q9BVA0* / Q8BG40* / katanin regulatory subunit B1*ENSGALG0000003437319
WDR61 / WD repeat-containing protein 61 / Q9ERF3* / Q9GZS3* / WD repeat domain 61*ENSGALG0000000322116
NLE1* / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSGALG0000000469110
NLE1* / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSGALG000000369638


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008380 RNA splicing IBA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr