ENSDARG00000023160


Danio rerio

Features
Gene ID: ENSDARG00000023160
  
Biological name :snrnp40
  
Synonyms : small nuclear ribonucleoprotein 40 (U5) / snrnp40
  
Possible biological names infered from orthology : Q6PE01 / Q96DI7 / small nuclear ribonucleoprotein U5 subunit 40 / U5 small nuclear ribonucleoprotein 40 kDa protein
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 43004408
Gene end: 43016395
  
Corresponding Affymetrix probe sets: Dr.24981.1.S1_at (Zebrafish Array)   NM_200322_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038728
NCBI entrez gene - 393292     See in Manteia.
RefSeq - NM_200322
RefSeq Peptide - NP_956616
swissprot - Q7ZTY9
ZFIN ID - ZDB-GENE-040426-978
Ensembl - ENSDARG00000023160
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRNP40ENSGALG00000000615Gallus gallus
 Q96DI7ENSG00000060688Homo sapiens
 Q6PE01ENSMUSG00000074088Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
wdr5 / WD repeat domain 5 / WDR5B* / Q9D7H2* / P61964* / P61965* / Q86VZ2* / WD repeat domain 5B*ENSDARG0000001690329
nle1 / notchless homolog 1 (Drosophila) / Q8VEJ4* / Q9NVX2* / notchless homolog 1* / Notchless protein homolog 1 *ENSDARG0000005710525
poc1b / A2CEH0 / POC1 centriolar protein B / Q8BHD1* / Q8TC44*ENSDARG0000002111024
Q7T394 / pafah1b1a / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1a / P43034* / P63005* / PAFAH1B1* / platelet-activating factor acetylhydrolase, isoform 1b, subunit 1...ENSDARG0000003201324
daw1 / dynein assembly factor with WDR repeat domains 1 / Q8N136* / dynein assembly factor with WD repeats 1*ENSDARG0000002146223
pafah1b1b / platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b / P43034* / PAFAH1B1* / platelet activating factor acetylhydrolase 1b regulatory subunit 1*ENSDARG0000002659523
katnb1 / Q7ZUV2 / katanin p80 (WD repeat containing) subunit B 1 / Q9BVA0* / Q8BG40* / katanin regulatory subunit B1* / Katanin p80 WD40 repeat-containing subunit B1 *ENSDARG0000000545621
wdr38 / WD repeat domain 38 / Q5JTN6*ENSDARG0000004480115
wdr61 / WD repeat domain 61 / Q9ERF3* / Q9GZS3*ENSDARG0000000775514
poc1a / POC1 centriolar protein A / Q8JZX3* / Q8NBT0*ENSDARG0000007853312


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008380 RNA splicing IBA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr