ENSG00000007168


Homo sapiens

Features
Gene ID: ENSG00000007168
  
Biological name :PAFAH1B1
  
Synonyms : P43034 / PAFAH1B1 / platelet activating factor acetylhydrolase 1b regulatory subunit 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: 1
Band: p13.3
Gene start: 2593210
Gene end: 2685615
  
Corresponding Affymetrix probe sets: 200813_s_at (Human Genome U133 Plus 2.0 Array)   200815_s_at (Human Genome U133 Plus 2.0 Array)   200816_s_at (Human Genome U133 Plus 2.0 Array)   211547_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000380378
Ensembl peptide - ENSP00000460258
Ensembl peptide - ENSP00000460591
Ensembl peptide - ENSP00000461087
NCBI entrez gene - 5048     See in Manteia.
OMIM - 601545
RefSeq - XM_017024702
RefSeq - XM_011523902
RefSeq - XM_011523903
RefSeq - XM_017024699
RefSeq - XM_017024700
RefSeq - XM_017024701
RefSeq - NM_000430
RefSeq - XM_011523901
RefSeq Peptide - NP_000421
swissprot - I3L3N5
swissprot - I3L495
swissprot - I3L384
swissprot - P43034
Ensembl - ENSG00000007168
  
Related genetic diseases (OMIM): 607432 - Lissencephaly 1, 607432
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pafah1b1bENSDARG00000026595Danio rerio
 Q7T394ENSDARG00000032013Danio rerio
 Q9PTR5ENSGALG00000005834Gallus gallus
 P63005ENSMUSG00000020745Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
WDR5 / P61964 / WD repeat domain 5ENSG0000019636326
NLE1 / Q9NVX2 / notchless homolog 1ENSG0000007353626
DAW1 / Q8N136 / dynein assembly factor with WD repeats 1ENSG0000012397725
WDR5B / Q86VZ2 / WD repeat domain 5BENSG0000019698125
POC1A / Q8NBT0 / POC1 centriolar protein AENSG0000016408723
WDR38 / Q5JTN6 / WD repeat domain 38ENSG0000013691820
KATNB1 / Q9BVA0 / katanin regulatory subunit B1ENSG0000014085420
POC1B / Q8TC44 / POC1 centriolar protein BENSG0000013932320
Q96DI7 / SNRNP40 / small nuclear ribonucleoprotein U5 subunit 40ENSG0000006068820
WDR61 / Q9GZS3 / WD repeat domain 61ENSG0000014039514


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006594  LIS1 homology motif
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017252  Dynein regulator LIS1
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR036322  WD40-repeat-containing domain superfamily
 IPR037190  LIS1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000086 G2/M transition of mitotic cell cycle TAS
 biological_processGO:0000132 establishment of mitotic spindle orientation IMP
 biological_processGO:0000226 microtubule cytoskeleton organization ISS
 biological_processGO:0001667 ameboidal-type cell migration IEA
 biological_processGO:0001675 acrosome assembly IEA
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0001961 positive regulation of cytokine-mediated signaling pathway IEA
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0007017 microtubule-based process IDA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007062 sister chromatid cohesion TAS
 biological_processGO:0007097 nuclear migration IEA
 biological_processGO:0007268 chemical synaptic transmission IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007281 germ cell development IBA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007405 neuroblast proliferation ISS
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007611 learning or memory IEA
 biological_processGO:0008090 retrograde axonal transport IEA
 biological_processGO:0008344 adult locomotory behavior IEA
 biological_processGO:0009306 protein secretion IEA
 biological_processGO:0010389 regulation of G2/M transition of mitotic cell cycle TAS
 biological_processGO:0010977 negative regulation of neuron projection development IEA
 biological_processGO:0016042 lipid catabolic process IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0017145 stem cell division IEA
 biological_processGO:0019226 transmission of nerve impulse IEA
 biological_processGO:0021540 corpus callosum morphogenesis IMP
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021819 layer formation in cerebral cortex IEA
 biological_processGO:0021895 cerebral cortex neuron differentiation IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0030036 actin cytoskeleton organization IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0031023 microtubule organizing center organization IMP
 biological_processGO:0036035 osteoclast development IEA
 biological_processGO:0040019 positive regulation of embryonic development IEA
 biological_processGO:0042249 establishment of planar polarity of embryonic epithelium IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0043622 cortical microtubule organization IEA
 biological_processGO:0045773 positive regulation of axon extension IEA
 biological_processGO:0045931 positive regulation of mitotic cell cycle IEA
 biological_processGO:0046329 negative regulation of JNK cascade IEA
 biological_processGO:0046469 platelet activating factor metabolic process ISS
 biological_processGO:0047496 vesicle transport along microtubule ISS
 biological_processGO:0048854 brain morphogenesis IMP
 biological_processGO:0050885 neuromuscular process controlling balance IMP
 biological_processGO:0051081 nuclear envelope disassembly IEA
 biological_processGO:0051130 positive regulation of cellular component organization IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051660 establishment of centrosome localization IEA
 biological_processGO:0051661 maintenance of centrosome location IEA
 biological_processGO:0060117 auditory receptor cell development IEA
 biological_processGO:0061003 positive regulation of dendritic spine morphogenesis IEA
 biological_processGO:0070507 regulation of microtubule cytoskeleton organization IEA
 biological_processGO:0090102 cochlea development IEA
 biological_processGO:0090176 microtubule cytoskeleton organization involved in establishment of planar polarity IEA
 biological_processGO:0097711 ciliary basal body-plasma membrane docking TAS
 biological_processGO:2000574 regulation of microtubule motor activity IBA
 cellular_componentGO:0000235 astral microtubule IDA
 cellular_componentGO:0000776 kinetochore IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005871 kinesin complex IEA
 cellular_componentGO:0005874 microtubule IEA
 cellular_componentGO:0005875 microtubule associated complex IEA
 cellular_componentGO:0005938 cell cortex IDA
 cellular_componentGO:0015630 microtubule cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0031252 cell leading edge IEA
 cellular_componentGO:0031514 motile cilium IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0031982 vesicle IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0090724 central region of growth cone IEA
 cellular_componentGO:1904115 axon cytoplasm IEA
 molecular_functionGO:0004623 phospholipase A2 activity TAS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008201 heparin binding ISS
 molecular_functionGO:0034452 dynactin binding ISS
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043274 phospholipase binding ISS
 molecular_functionGO:0045505 dynein intermediate chain binding IEA
 molecular_functionGO:0051219 phosphoprotein binding IEA
 molecular_functionGO:0070840 dynein complex binding IDA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
RHO GTPases Activate Formins
COPI-independent Golgi-to-ER retrograde traffic
Mitotic Prometaphase
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000023 Inguinal hernia 
Show

 HP:0000098 Increased body height 
Show

 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000177 Abnormality of upper lip "An abnormality of the `upper lip` (FMA:59817)." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001285 Spastic tetraparesis "Spastic weakness affecting all four limbs." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001339 Lissencephaly "A congenital absence of the convolutions of the cerebral cortex and a poorly formed sylvian fissure." [HPO:curators]
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 HP:0001374 Congenital hip dislocation 
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 HP:0001510 Growth retardation 
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 HP:0001539 Omphalocele 
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 HP:0001561 Polyhydramnios 
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002282 Heterotopia 
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003745 Sporadic 
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 HP:0003828 Variable expressivity 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0005484 Microcephaly, postnatal 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000104671 DCTN6 / O00399 / dynactin subunit 6  / complex
 ENSG00000131966 ACTR10 / Q9NZ32 / actin related protein 10 homolog  / complex
 ENSG00000088986 DYNLL1 / P63167 / dynein light chain LC8-type 1  / complex
 ENSG00000137100 DCTN3 / O75935 / dynactin subunit 3  / complex
 ENSG00000135720 O43237 / DYNC1LI2 / dynein cytoplasmic 1 light intermediate chain 2  / complex
 ENSG00000077549 CAPZB / P47756 / capping actin protein of muscle Z-line beta subunit  / complex
 ENSG00000116489 CAPZA1 / P52907 / capping actin protein of muscle Z-line alpha subunit 1  / complex
 ENSG00000079462 Q15102 / PAFAH1B3 / platelet activating factor acetylhydrolase 1b catalytic subunit 3  / complex
 ENSG00000144635 Q9Y6G9 / DYNC1LI1 / dynein cytoplasmic 1 light intermediate chain 1  / complex
 ENSG00000168092 P68402 / PAFAH1B2 / platelet activating factor acetylhydrolase 1b catalytic subunit 2  / complex
 ENSG00000166847 DCTN5 / Q9BTE1 / dynactin subunit 5  / complex
 ENSG00000177938 CAPZA3 / Q96KX2 / capping actin protein of muscle Z-line alpha subunit 3  / complex
 ENSG00000077380 Q13409 / DYNC1I2 / dynein cytoplasmic 1 intermediate chain 2  / complex
 ENSG00000158560 O14576 / DYNC1I1 / dynein cytoplasmic 1 intermediate chain 1  / complex
 ENSG00000204843 DCTN1 / Q14203 / dynactin subunit 1  / complex
 ENSG00000197102 Q14204 / DYNC1H1 / dynein cytoplasmic 1 heavy chain 1  / complex
 ENSG00000198898 CAPZA2 / P47755 / capping actin protein of muscle Z-line alpha subunit 2  / complex
 ENSG00000138107 ACTR1A / P61163 / ARP1 actin related protein 1 homolog A  / complex
 ENSG00000151746 BICD1 / Q96G01 / BICD cargo adaptor 1  / reaction
 ENSG00000007168 P43034 / PAFAH1B1 / platelet activating factor acetylhydrolase 1b regulatory subunit 1  / complex
 ENSG00000141429 GALNT1 / Q10472 / polypeptide N-acetylgalactosaminyltransferase 1  / reaction
 ENSG00000143641 GALNT2 / Q10471 / polypeptide N-acetylgalactosaminyltransferase 2  / reaction
 ENSG00000175582 RAB6A / P20340 / RAB6A, member RAS oncogene family  / reaction
 ENSG00000132912 DCTN4 / Q9UJW0 / dynactin subunit 4  / complex
 ENSG00000175203 DCTN2 / Q13561 / dynactin subunit 2  / complex
 ENSG00000264364 DYNLL2 / Q96FJ2 / dynein light chain LC8-type 2  / complex






 

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