ENSDARG00000058960


Danio rerio

Features
Gene ID: ENSDARG00000058960
  
Biological name :otol1b
  
Synonyms : otol1b / otolin 1b
  
Possible biological names infered from orthology : A6NHN0 / OTOL1 / otolin 1 / Q4ZJM7
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 1705167
Gene end: 1711472
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000076378
NCBI entrez gene - 572364     See in Manteia.
RefSeq - NM_001309456
RefSeq Peptide - NP_001296385
swissprot - E7FAJ7
ZFIN ID - ZDB-GENE-080416-3
Ensembl - ENSDARG00000058960
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OTOL1ENSGALG00000026305Gallus gallus
 OTOL1ENSG00000182447Homo sapiens
 Otol1ENSMUSG00000027788Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A5PN28 / otol1a / otolin 1a / OTOL1* / Q4ZJM7* / A6NHN0* / otolin 1*ENSDARG0000000177152
col8a2 / collagen, type VIII, alpha 2 / P25318* / P25067* / Collagen alpha-2(VIII) chain * / collagen type VIII alpha 2 chain*ENSDARG0000006089332
col8a1a / collagen, type VIII, alpha 1a / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000007740331
col8a1b / collagen, type VIII, alpha 1b / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000000353331
col10a1b / collagen, type X, alpha 1b / Q03692* / COL10A1* / collagen type X alpha 1 chain*ENSDARG0000010153529
col10a1a / collagen, type X, alpha 1a / Q05306* / Q03692* / COL10A1* / Collagen alpha-1(X) chain * / collagen type X alpha 1 chain*ENSDARG0000005475329
CABZ01067232.1ENSDARG0000005740827
c1qtnf9 / C1q and TNF related 9 / B2RNN3* / P0C862* / C1QTNF9B* / C1q and TNF related 9B*ENSDARG0000005831826
c1qtnf2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSDARG0000005994421
adipoqb / adiponectin, C1Q and collagen domain containing, b / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000010008620
c1qtnf7 / C1q and TNF related 7 / Q9BXJ2*ENSDARG0000007494919
adipoqa / adiponectin, C1Q and collagen domain containing, a / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000006222818
c1qtnf5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSDARG0000005613417
c1qc / complement component 1, q subcomponent, C chain / P02747* / Q02105* / complement C1q C chain* / Complement C1q subcomponent subunit C *ENSDARG0000009562715
c1qb / complement component 1, q subcomponent, B chain / P02746* / P14106* / complement C1q B chain* / Complement C1q subcomponent subunit B *ENSDARG0000004461215


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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