ENSDARG00000003533


Danio rerio

Features
Gene ID: ENSDARG00000003533
  
Biological name :col8a1b
  
Synonyms : col8a1b / collagen, type VIII, alpha 1b
  
Possible biological names infered from orthology : COL8A1 / Collagen alpha-1(VIII) chain Vastatin / collagen type VIII alpha 1 chain / P27658 / Q00780
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 28647130
Gene end: 28668442
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129340
Ensembl peptide - ENSDARP00000156329
Ensembl peptide - ENSDARP00000006367
NCBI entrez gene - 562442     See in Manteia.
RefSeq - XM_005161783
RefSeq - XM_685822
swissprot - Q1L863
swissprot - X1WGI4
ZFIN ID - ZDB-GENE-060503-140
Ensembl - ENSDARG00000003533
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL8A1ENSGALG00000015253Gallus gallus
 COL8A1ENSG00000144810Homo sapiens
 Col8a1ENSMUSG00000068196Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col8a1a / collagen, type VIII, alpha 1a / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000007740361
col8a2 / collagen, type VIII, alpha 2 / P25318* / P25067* / Collagen alpha-2(VIII) chain * / collagen type VIII alpha 2 chain*ENSDARG0000006089349
col10a1b / collagen, type X, alpha 1b / Q03692* / COL10A1* / collagen type X alpha 1 chain*ENSDARG0000010153544
col10a1a / collagen, type X, alpha 1a / Q05306* / Q03692* / COL10A1* / Collagen alpha-1(X) chain * / collagen type X alpha 1 chain*ENSDARG0000005475344
otol1b / otolin 1b / OTOL1* / A6NHN0* / Q4ZJM7* / otolin 1*ENSDARG0000005896021
CABZ01067232.1ENSDARG0000005740821
A5PN28 / otol1a / otolin 1a / OTOL1* / Q4ZJM7* / A6NHN0* / otolin 1*ENSDARG0000000177120
c1qtnf9 / C1q and TNF related 9 / B2RNN3* / P0C862* / C1QTNF9B* / C1q and TNF related 9B*ENSDARG0000005831818
c1qtnf7 / C1q and TNF related 7 / Q9BXJ2*ENSDARG0000007494914
c1qtnf2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSDARG0000005994413
adipoqb / adiponectin, C1Q and collagen domain containing, b / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000010008613
adipoqa / adiponectin, C1Q and collagen domain containing, a / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000006222811
c1qc / complement component 1, q subcomponent, C chain / P02747* / Q02105* / complement C1q C chain* / Complement C1q subcomponent subunit C *ENSDARG0000009562710
c1qtnf5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSDARG0000005613410
c1qb / complement component 1, q subcomponent, B chain / P02746* / P14106* / complement C1q B chain* / Complement C1q subcomponent subunit B *ENSDARG000000446129


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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