ENSGALG00000015253


Gallus gallus

Features
Gene ID: ENSGALG00000015253
  
Biological name :COL8A1
  
Synonyms : COL8A1 / collagen alpha-1(VIII) chain precursor
  
Possible biological names infered from orthology : Collagen alpha-1(VIII) chain Vastatin / collagen type VIII alpha 1 chain / P27658 / Q00780
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 84257313
Gene end: 84344008
  
Corresponding Affymetrix probe sets: Gga.3013.1.S1_at (Chicken Array)   GgaAffx.9712.1.S1_at (Chicken Array)   GgaAffx.9712.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024565
NCBI entrez gene - 418378     See in Manteia.
RefSeq - NM_001293134
RefSeq - XM_004938241
RefSeq - XM_015296025
RefSeq Peptide - NP_001280063
swissprot - E1C353
Ensembl - ENSGALG00000015253
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col8a1aENSDARG00000077403Danio rerio
 col8a1bENSDARG00000003533Danio rerio
 COL8A1ENSG00000144810Homo sapiens
 Col8a1ENSMUSG00000068196Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL8A2 / collagen type VIII alpha 2 chain / P25067* / P25318* / Collagen alpha-2(VIII) chain *ENSGALG0000000229852
COL10A1 / collagen type X alpha 1 chain / Q03692* / Q05306* / Collagen alpha-1(X) chain *ENSGALG0000001496547
OTOL1 / otolin 1 / A6NHN0* / Q4ZJM7*ENSGALG0000002630522
B2RNN3* / P0C862* / Q4ZJN1* / C1QTNF9* / C1QTNF9B* / C1q and TNF related 9* / C1q and TNF related 9B* / Complement C1q and tumor necrosis factor-related protein 9 *ENSGALG0000001711718
C1QTNF7 / C1q and TNF related 7 / Q8BVD7* / Q9BXJ2* / Complement C1q tumor necrosis factor-related protein 7 *ENSGALG0000001451514
C1QTNF2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSGALG0000002723213
ADIPOQ / adiponectin precursor / Q15848* / Q60994* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSGALG0000000555412
C1QTNF5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSGALG0000000675811
C1QB / complement C1q B chain / P02746* / P14106* / Complement C1q subcomponent subunit B *ENSGALG0000000477111
C1QC / complement C1q C chain / P02747* / Q02105* / Complement C1q subcomponent subunit C *ENSGALG0000002966910


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010811 positive regulation of cell-substrate adhesion IEA
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0048593 camera-type eye morphogenesis IEA
 biological_processGO:0050673 epithelial cell proliferation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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