ENSGALG00000014965


Gallus gallus

Features
Gene ID: ENSGALG00000014965
  
Biological name :COL10A1
  
Synonyms : COL10A1 / collagen type X alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(X) chain / Q03692 / Q05306
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 64174068
Gene end: 64180744
  
Corresponding Affymetrix probe sets: Gga.4865.1.S1_at (Chicken Array)   GgaAffx.24555.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024087
NCBI entrez gene - 100858979     See in Manteia.
RefSeq - XM_003641007
RefSeq - XM_004940290
swissprot - F1NRH2
Ensembl - ENSGALG00000014965
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col10a1aENSDARG00000054753Danio rerio
 col10a1bENSDARG00000101535Danio rerio
 Q03692ENSG00000123500Homo sapiens
 Q05306ENSMUSG00000039462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL8A2 / collagen type VIII alpha 2 chain / P25067* / P25318* / Collagen alpha-2(VIII) chain *ENSGALG0000000229856
COL8A1 / collagen alpha-1(VIII) chain precursor / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSGALG0000001525352
OTOL1 / otolin 1 / A6NHN0* / Q4ZJM7*ENSGALG0000002630524
B2RNN3* / P0C862* / Q4ZJN1* / C1QTNF9* / C1QTNF9B* / C1q and TNF related 9* / C1q and TNF related 9B* / Complement C1q and tumor necrosis factor-related protein 9 *ENSGALG0000001711720
C1QTNF2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSGALG0000002723217
C1QTNF7 / C1q and TNF related 7 / Q8BVD7* / Q9BXJ2* / Complement C1q tumor necrosis factor-related protein 7 *ENSGALG0000001451516
ADIPOQ / adiponectin precursor / Q15848* / Q60994* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSGALG0000000555414
C1QB / complement C1q B chain / P02746* / P14106* / Complement C1q subcomponent subunit B *ENSGALG0000000477113
C1QC / complement C1q C chain / P02747* / Q02105* / Complement C1q subcomponent subunit C *ENSGALG0000002966913
C1QTNF5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSGALG0000000675813


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005938 cell cortex IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Non-integrin membrane-ECM interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000038290 P4HB / protein disulfide-isomerase precursor / P09103* / P07237* / prolyl 4-hydroxylase subunit beta* / prolyl 4-hydroxylase, beta polypeptide*  / complex / reaction






 

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