ENSG00000123500


Homo sapiens

Features
Gene ID: ENSG00000123500
  
Biological name :COL10A1
  
Synonyms : COL10A1 / collagen type X alpha 1 chain / Q03692
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q22.1
Gene start: 116118923
Gene end: 116158747
  
Corresponding Affymetrix probe sets: 205941_s_at (Human Genome U133 Plus 2.0 Array)   217428_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000243222
Ensembl peptide - ENSP00000327368
Ensembl peptide - ENSP00000392712
Ensembl peptide - ENSP00000411285
NCBI entrez gene - 1300     See in Manteia.
OMIM - 120110
RefSeq - XM_017010249
RefSeq - NM_000493
RefSeq - XM_006715333
RefSeq - XM_011535432
RefSeq - XM_011535433
RefSeq - XM_017010248
RefSeq Peptide - NP_000484
swissprot - Q03692
swissprot - Q5QPC7
swissprot - Q5QPC8
Ensembl - ENSG00000123500
  
Related genetic diseases (OMIM): 156500 - Metaphyseal chondrodysplasia, Schmid type, 156500
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col10a1aENSDARG00000054753Danio rerio
 col10a1bENSDARG00000101535Danio rerio
 COL10A1ENSGALG00000014965Gallus gallus
 Q05306ENSMUSG00000039462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL8A2 / P25067 / collagen type VIII alpha 2 chainENSG0000017181253
COL8A1 / P27658 / collagen type VIII alpha 1 chainENSG0000014481052
OTOL1 / A6NHN0 / otolin 1ENSG0000018244725
B2RNN3 / C1QTNF9B / C1q and TNF related 9BENSG0000020586320
P0C862 / C1QTNF9 / C1q and TNF related 9ENSG0000024065420
Q9BXJ5 / C1QTNF2 / C1q and TNF related 2ENSG0000014586117
Q9BXJ2 / C1QTNF7 / C1q and TNF related 7ENSG0000016314516
ADIPOQ / Q15848 / adiponectin, C1Q and collagen domain containingENSG0000018109215
Q9BXJ0 / C1QTNF5 / C1q and TNF related 5ENSG0000022395314
C1QC / P02747 / complement C1q C chainENSG0000015918914
C1QB / P02746 / complement C1q B chainENSG0000017336913


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer TAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005938 cell cortex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Non-integrin membrane-ECM interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000926 Platyspondyly 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001156 Brachydactyly 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0002812 Coxa vara 
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 HP:0002970 Genu varum 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
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 HP:0003301 Irregular vertebral endplates "An irregular surface of the vertebral end plates, which are normally relatively smooth." [HPO:curators]
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 HP:0003371 Enlarged capital femoral epiphyses 
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 HP:0003502 Mild short stature "A mild degree of short stature." [HPO:curators]
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 HP:0004348 Abnormality of bone mineral density "This term applies to all changes in bone mineralisation and or ossification which (depending on severity) can be seen on x-rays as a change in density and or structure of the bone. Changes may affect all bones of the organism, just certain bones or only parts of bones and include decreased mineralisation as may be seen in osteoporosis or increased mineralisation and or ossification as in osteopetrosis, exostoses or any kind of atypic calicfications of different origin and distribution. The overall amount of mineralisation of the bone-organ can be measured as the amount of matter per cubic centimeter of bones, usually measured by densitometry of the lumbar spine or hip. The measurements are usually reported as g/cm3 or as a Z-score (the number of standard deviations above or below the mean for the patient s age and sex). Note that measurement with this method does not reflect local changes in other bones, and as such might not be correct with regard the hole bone-organ." [HPO:curators]
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 HP:0005019 Diaphyseal thickening 
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 HP:0005819 Abnormally short and broad middle phalanges 
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 HP:0005871 Metaphyseal chondrodysplasia 
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 HP:0005930 Abnormality of the epiphyses 
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 HP:0006028 Metaphyseal cupping of metacarpals "Metaphyseal cupping affecting the metacarpal bones." [HPO:curators]
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 HP:0006208 Metaphyseal cupping of proximal phalanges "Metaphyseal cupping affecting the proximal phalanges." [HPO:curators]
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 HP:0006414 Tibial bowing, especially at ankle 
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 HP:0006431 Metaphyseal abnormalities of distal and proximal femurs 
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 HP:0008833 Irregular acetabular roof 
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 HP:0008848 Moderately short stature "A moderate degree of short stature." [HPO:curators]
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 HP:0009826 Hypoplasia involving bones of the extremities 
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 HP:0009844 Broad middle phalanges of the hand 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000072682 P4HA2 / O15460 / prolyl 4-hydroxylase subunit alpha 2  / reaction
 ENSG00000185624 P4HB / P07237 / prolyl 4-hydroxylase subunit beta  / complex / reaction
 ENSG00000122884 P4HA1 / P13674 / prolyl 4-hydroxylase subunit alpha 1  / reaction
 ENSG00000149380 P4HA3 / Q7Z4N8 / prolyl 4-hydroxylase subunit alpha 3  / reaction






 

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