ENSDARG00000101535


Danio rerio

Features
Gene ID: ENSDARG00000101535
  
Biological name :col10a1b
  
Synonyms : col10a1b / collagen, type X, alpha 1b
  
Possible biological names infered from orthology : COL10A1 / Collagen alpha-1(X) chain / collagen type X alpha 1 chain / Q03692 / Q05306
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 484256
Gene end: 487783
  
Corresponding Affymetrix probe sets: Dr.5680.1.S1_at (Zebrafish Array)   XM_678423_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130066
NCBI entrez gene - 555804     See in Manteia.
RefSeq - XM_678423
swissprot - A0A0R4IAT5
ZFIN ID - ZDB-GENE-030131-7079
Ensembl - ENSDARG00000101535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL10A1ENSGALG00000014965Gallus gallus
 Q03692ENSG00000123500Homo sapiens
 Q05306ENSMUSG00000039462Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col10a1a / collagen, type X, alpha 1a / Q05306* / Q03692* / COL10A1* / Collagen alpha-1(X) chain * / collagen type X alpha 1 chain*ENSDARG0000005475366
col8a1a / collagen, type VIII, alpha 1a / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000007740350
col8a2 / collagen, type VIII, alpha 2 / P25318* / P25067* / Collagen alpha-2(VIII) chain * / collagen type VIII alpha 2 chain*ENSDARG0000006089349
col8a1b / collagen, type VIII, alpha 1b / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000000353348
A5PN28 / otol1a / otolin 1a / OTOL1* / Q4ZJM7* / A6NHN0* / otolin 1*ENSDARG0000000177122
CABZ01067232.1ENSDARG0000005740821
otol1b / otolin 1b / OTOL1* / A6NHN0* / Q4ZJM7* / otolin 1*ENSDARG0000005896021
c1qtnf9 / C1q and TNF related 9 / B2RNN3* / P0C862* / C1QTNF9B* / C1q and TNF related 9B*ENSDARG0000005831819
adipoqb / adiponectin, C1Q and collagen domain containing, b / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000010008614
c1qtnf2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSDARG0000005994414
c1qtnf7 / C1q and TNF related 7 / Q9BXJ2*ENSDARG0000007494914
adipoqa / adiponectin, C1Q and collagen domain containing, a / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000006222813
c1qtnf5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSDARG0000005613412
c1qc / complement component 1, q subcomponent, C chain / P02747* / Q02105* / complement C1q C chain* / Complement C1q subcomponent subunit C *ENSDARG0000009562711
c1qb / complement component 1, q subcomponent, B chain / P02746* / P14106* / complement C1q B chain* / Complement C1q subcomponent subunit B *ENSDARG0000004461210


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Non-integrin membrane-ECM interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000010085 p4ha2 / procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 / O15460* / prolyl 4-hydroxylase subunit alpha 2*  / reaction
 ENSDARG00000033537 p4ha1a / prolyl 4-hydroxylase, alpha polypeptide I a / P4HA1* / P13674* / Q60715* / prolyl 4-hydroxylase subunit alpha 1*  / reaction
 ENSDARG00000071082 p4ha1b / prolyl 4-hydroxylase, alpha polypeptide I b / P4HA1* / P13674* / Q60715* / prolyl 4-hydroxylase subunit alpha 1*  / reaction
 ENSDARG00000105116 p4hb / prolyl 4-hydroxylase, beta polypeptide / P07237* / P09103* / prolyl 4-hydroxylase subunit beta*  / reaction / complex






 

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