ENSDARG00000060893


Danio rerio

Features
Gene ID: ENSDARG00000060893
  
Biological name :col8a2
  
Synonyms : col8a2 / collagen, type VIII, alpha 2
  
Possible biological names infered from orthology : Collagen alpha-2(VIII) chain / collagen type VIII alpha 2 chain / P25067 / P25318
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 35496282
Gene end: 35596207
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114013
NCBI entrez gene - 794479     See in Manteia.
RefSeq - NM_001082901
RefSeq Peptide - NP_001076370
swissprot - Q1LUA9
ZFIN ID - ZDB-GENE-060503-488
Ensembl - ENSDARG00000060893
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL8A2ENSGALG00000002298Gallus gallus
 COL8A2ENSG00000171812Homo sapiens
 Col8a2ENSMUSG00000056174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col8a1b / collagen, type VIII, alpha 1b / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000000353352
col8a1a / collagen, type VIII, alpha 1a / COL8A1* / P27658* / Q00780* / collagen type VIII alpha 1 chain* / Collagen alpha-1(VIII) chain Vastatin*ENSDARG0000007740350
col10a1a / collagen, type X, alpha 1a / Q05306* / Q03692* / COL10A1* / Collagen alpha-1(X) chain * / collagen type X alpha 1 chain*ENSDARG0000005475348
col10a1b / collagen, type X, alpha 1b / Q03692* / COL10A1* / collagen type X alpha 1 chain*ENSDARG0000010153547
A5PN28 / otol1a / otolin 1a / OTOL1* / Q4ZJM7* / A6NHN0* / otolin 1*ENSDARG0000000177124
otol1b / otolin 1b / OTOL1* / A6NHN0* / Q4ZJM7* / otolin 1*ENSDARG0000005896023
CABZ01067232.1ENSDARG0000005740822
c1qtnf9 / C1q and TNF related 9 / B2RNN3* / P0C862* / C1QTNF9B* / C1q and TNF related 9B*ENSDARG0000005831819
c1qtnf7 / C1q and TNF related 7 / Q9BXJ2*ENSDARG0000007494914
c1qtnf2 / C1q and TNF related 2 / Q9BXJ5* / Q9D8U4* / Complement C1q tumor necrosis factor-related protein 2 *ENSDARG0000005994414
adipoqb / adiponectin, C1Q and collagen domain containing, b / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000010008613
adipoqa / adiponectin, C1Q and collagen domain containing, a / Q60994* / ADIPOQ* / Q15848* / Adiponectin * / adiponectin, C1Q and collagen domain containing*ENSDARG0000006222812
c1qtnf5 / C1q and TNF related 5 / Q8K479* / Q9BXJ0* / Complement C1q tumor necrosis factor-related protein 5 *ENSDARG0000005613411
c1qc / complement component 1, q subcomponent, C chain / P02747* / Q02105* / complement C1q C chain* / Complement C1q subcomponent subunit C *ENSDARG0000009562711
c1qb / complement component 1, q subcomponent, B chain / P02746* / P14106* / complement C1q B chain* / Complement C1q subcomponent subunit B *ENSDARG000000446129


Protein motifs (from Interpro)
Interpro ID Name
 IPR001073  C1q domain
 IPR008160  Collagen triple helix repeat
 IPR008983  Tumour necrosis factor-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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