ENSDARG00000060054


Danio rerio

Features
Gene ID: ENSDARG00000060054
  
Biological name :epc1b
  
Synonyms : enhancer of polycomb homolog 1 (Drosophila) b / epc1b
  
Possible biological names infered from orthology : enhancer of polycomb homolog 1 / EPC1 / Q8C9X6 / Q9H2F5
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 43585571
Gene end: 43605556
  
Corresponding Affymetrix probe sets: Dr.13646.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000078658
NCBI entrez gene - 566102     See in Manteia.
swissprot - A3KNA6
ZFIN ID - ZDB-GENE-090609-1
Ensembl - ENSDARG00000060054
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EPC1ENSGALG00000007169Gallus gallus
 EPC1ENSG00000120616Homo sapiens
 Epc1ENSMUSG00000024240Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
epc1a / enhancer of polycomb homolog 1 (Drosophila) a / EPC1* / Q9H2F5* / enhancer of polycomb homolog 1*ENSDARG0000010157965
epc2 / enhancer of polycomb homolog 2 (Drosophila) / Q52LR7* / Q8C0I4* / enhancer of polycomb homolog 2*ENSDARG0000000748546


Protein motifs (from Interpro)
Interpro ID Name
 IPR009607  Enhancer of polycomb, C-terminal
 IPR019542  Enhancer of polycomb-like, N-terminal
 IPR024943  Enhancer of polycomb protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0016573 histone acetylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0032777 Piccolo NuA4 histone acetyltransferase complex IBA
 cellular_componentGO:0035267 NuA4 histone acetyltransferase complex IEA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA


Pathways (from Reactome)
Pathway description
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000019293 tfdp1a / transcription factor Dp-1, a / TFDP1* / TFDP3* / Q14186* / Q5H9I0* / Q08639* / transcription factor Dp-1* / transcription factor Dp family member 3*  / reaction / complex
 ENSDARG00000008119 si:ch211-195d17.2 / E2F6* / O54917* / O75461* / E2F transcription factor 6* / Transcription factor E2F6 *  / reaction / complex
 ENSDARG00000098924 suz12b / B0R1D5 / SUZ12 polycomb repressive complex 2b subunit / SUZ12* / Q80U70* / Q15022* / Polycomb protein Suz12 * / SUZ12 polycomb repressive complex 2 subunit*  / complex / reaction
 ENSDARG00000099640 eed / Q566T0 / embryonic ectoderm development / O75530* / Q921E6* / Polycomb protein EED *  / complex / reaction






 

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