ENSDARG00000060207


Danio rerio

Features
Gene ID: ENSDARG00000060207
  
Biological name :traf7
  
Synonyms : TNF receptor-associated factor 7 / traf7
  
Possible biological names infered from orthology : Q6Q0C0
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 35608385
Gene end: 35634727
  
Corresponding Affymetrix probe sets: Dr.14712.1.A1_at (Zebrafish Array)   NM_001080185_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000150464
Ensembl peptide - ENSDARP00000154096
Ensembl peptide - ENSDARP00000119094
NCBI entrez gene - 563746     See in Manteia.
RefSeq - NM_001080185
RefSeq Peptide - NP_001073654
swissprot - A1L1U9
ZFIN ID - ZDB-GENE-070112-2212
Ensembl - ENSDARG00000060207
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAF7ENSGALG00000005767Gallus gallus
 TRAF7ENSG00000131653Homo sapiens
 Traf7ENSMUSG00000052752Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fbxw11a / F-box and WD repeat domain containing 11a / FBXW11* / Q9UKB1* / F-box and WD repeat domain containing 11*ENSDARG0000010480616
fbxw7 / F-box and WD repeat domain containing 7 / Q8VBV4* / Q969H0* / F-box/WD repeat-containing protein 7 *ENSDARG0000006099416
fbxw11b / F-box and WD repeat domain containing 11b / Q9UKB1* / FBXW11* / Q5SRY7* / F-box/WD repeat-containing protein 11 * / F-box and WD repeat domain containing 11*ENSDARG0000001723016
znf106a / zinc finger protein 106a / Q9H2Y7* / Zfp106* / ZNF106* / zinc finger protein 106*ENSDARG0000001665116
fbxw2 / F-box and WD repeat domain containing 2 / Q9UKT8*ENSDARG0000000974512
fbxw10 / F-box and WD repeat domain containing 10 / CDRT1* / Q5XX13* / O95170* / Q5SUS0* / CMT1A duplicated region transcript 1* / F-box/WD repeat-containing protein 10 *ENSDARG000000864849
znf106b / zinc finger protein 106bENSDARG000000919478


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR001841  Zinc finger, RING-type
 IPR008974  TRAF-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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