ENSDARG00000061810


Danio rerio

Features
Gene ID: ENSDARG00000061810
  
Biological name :si:dkey-110c1.10
  
Synonyms : mbd3b / si:dkey-110c1.10
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 20246587
Gene end: 20309283
  
Corresponding Affymetrix probe sets: Dr.24916.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000048774
Ensembl peptide - ENSDARP00000114041
Ensembl peptide - ENSDARP00000117244
Ensembl peptide - ENSDARP00000156475
NCBI entrez gene - 321217     See in Manteia.
swissprot - F1QL92
swissprot - F1QPJ2
swissprot - F1QXS0
ZFIN ID - ZDB-GENE-030131-9792
ZFIN ID - ZDB-GENE-050208-429
Ensembl - ENSDARG00000061810
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012984Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
myo5ab / myosin VAb / MYO5A* / Q99104* / Q9Y4I1* / myosin VA* / Unconventional myosin-Va *ENSDARG0000002521856
myo5aa / myosin VAa / MYO5A* / Q99104* / Q9Y4I1* / myosin VA* / Unconventional myosin-Va *ENSDARG0000006163555
myo5b / myosin VB / Q9ULV0* / AC090227.1*ENSDARG0000006200355
myo5c / myosin VC / Q9NQX4*ENSDARG0000010423549
myo7ab / myosin VIIAb / MYO7A* / P97479* / Q13402* / myosin VIIA* / Unconventional myosin-VIIa *ENSDARG0000004463232
myo7aa / myosin VIIAa / MYO7A* / Q13402* / myosin VIIA*ENSDARG0000009987132
si:ch73-194h10.2 / MYO7B* / Q6PIF6* / Q99MZ6* / myosin VIIB* / Unconventional myosin-VIIb *ENSDARG0000004444131
myo7bb / myosin VIIBb / MYO7B* / Q6PIF6* / Q99MZ6* / myosin VIIB* / Unconventional myosin-VIIb *ENSDARG0000007720131
MYO9B / si:zfos-588f8.1 / Q13459* / myosin IXB*ENSDARG0000007831329
myo10 / myosin X / F8VQB6* / Q9HD67* / Mus musculus myosin X (Myo10), transcript variant 3, mRNA.*ENSDARG0000001700429
myo9aa / myosin IXAa / MYO9A* / B2RTY4* / myosin IXA*ENSDARG0000007672929
myo10l1 / myosin X-like 1ENSDARG0000007472328
myo6b / myosin VIb / MYO6* / Q9UM54* / myosin VI*ENSDARG0000004214127
myo6a / myosin VIa / MYO6* / Q9UM54* / myosin VI*ENSDARG0000004401627
myo9ab / myosin IXAb / MYO9A* / Q8C170* / B2RTY4* / myosin IXA* / Unconventional myosin-IXa *ENSDARG0000007384327
myo9b / myosin IXb / Q13459*ENSDARG0000007741026
myo10l3 / myosin X-like 3ENSDARG0000007414310


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001609  Myosin head, motor domain
 IPR001739  Methyl-CpG DNA binding
 IPR002710  Dilute domain
 IPR016177  DNA-binding domain superfamily
 IPR025884  Methyl-CpG binding protein 2/3, C-terminal domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR032343  Methyl-CpG-binding domain protein 2/3, p55-binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0006346 methylation-dependent chromatin silencing IBA
 biological_processGO:0007018 microtubule-based movement IEA
 biological_processGO:0060216 definitive hemopoiesis IMP
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016459 myosin complex IEA
 cellular_componentGO:0016581 NuRD complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003774 motor activity IEA
 molecular_functionGO:0003777 microtubule motor activity IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0008327 methyl-CpG binding IBA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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