ENSDARG00000062003


Danio rerio

Features
Gene ID: ENSDARG00000062003
  
Biological name :myo5b
  
Synonyms : myo5b / myosin VB
  
Possible biological names infered from orthology : AC090227.1 / Q9ULV0
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 22446240
Gene end: 22547496
  
Corresponding Affymetrix probe sets: Dr.22614.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000083463
Ensembl peptide - ENSDARP00000144138
Ensembl peptide - ENSDARP00000138582
Ensembl peptide - ENSDARP00000134104
Ensembl peptide - ENSDARP00000130039
NCBI entrez gene - 567402     See in Manteia.
RefSeq - NM_001161632
RefSeq - XM_021468887
RefSeq Peptide - NP_001155104
swissprot - A0A0R4IB90
swissprot - F1QKS0
swissprot - A0A286YAD0
swissprot - A0A0R4IPW9
swissprot - A0A0R4IJN0
ZFIN ID - ZDB-GENE-031219-7
Ensembl - ENSDARG00000062003
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AC090227.1ENSG00000266997Homo sapiens
 MYO5BENSG00000167306Homo sapiens
 Myo5bENSMUSG00000025885Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
myo5aa / myosin VAa / MYO5A* / Q99104* / Q9Y4I1* / myosin VA* / Unconventional myosin-Va *ENSDARG0000006163561
myo5ab / myosin VAb / MYO5A* / Q99104* / Q9Y4I1* / myosin VA* / Unconventional myosin-Va *ENSDARG0000002521857
myo5c / myosin VC / Q9NQX4*ENSDARG0000010423546
mbd3b / si:dkey-110c1.10ENSDARG0000006181031
myo7aa / myosin VIIAa / MYO7A* / Q13402* / myosin VIIA*ENSDARG0000009987124
myo7ab / myosin VIIAb / MYO7A* / P97479* / Q13402* / myosin VIIA* / Unconventional myosin-VIIa *ENSDARG0000004463224
si:ch73-194h10.2 / MYO7B* / Q6PIF6* / Q99MZ6* / myosin VIIB* / Unconventional myosin-VIIb *ENSDARG0000004444124
myo7bb / myosin VIIBb / MYO7B* / Q6PIF6* / Q99MZ6* / myosin VIIB* / Unconventional myosin-VIIb *ENSDARG0000007720123
myo9aa / myosin IXAa / MYO9A* / B2RTY4* / myosin IXA*ENSDARG0000007672922
MYO9B / si:zfos-588f8.1 / Q13459* / myosin IXB*ENSDARG0000007831321
myo10 / myosin X / F8VQB6* / Q9HD67* / Mus musculus myosin X (Myo10), transcript variant 3, mRNA.*ENSDARG0000001700421
myo10l1 / myosin X-like 1ENSDARG0000007472320
myo9ab / myosin IXAb / MYO9A* / Q8C170* / B2RTY4* / myosin IXA* / Unconventional myosin-IXa *ENSDARG0000007384320
myo9b / myosin IXb / Q13459*ENSDARG0000007741018
myo6a / myosin VIa / MYO6* / Q9UM54* / myosin VI*ENSDARG0000004401618
myo6b / myosin VIb / MYO6* / Q9UM54* / myosin VI*ENSDARG0000004214118
myo10l3 / myosin X-like 3ENSDARG000000741439


Protein motifs (from Interpro)
Interpro ID Name
 IPR000048  IQ motif, EF-hand binding site
 IPR001609  Myosin head, motor domain
 IPR002710  Dilute domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007018 microtubule-based movement IEA
 biological_processGO:0008361 regulation of cell size IMP
 biological_processGO:0043588 skin development IMP
 biological_processGO:0048546 digestive tract morphogenesis IMP
 biological_processGO:0061564 axon development IMP
 biological_processGO:0098856 intestinal lipid absorption IMP
 cellular_componentGO:0016459 myosin complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003774 motor activity IEA
 molecular_functionGO:0003777 microtubule motor activity IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008017 microtubule binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000105 epidermis epidermis structure , abnormal
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 ZFA:0000108 fin fin decreased size , abnormal
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 ZFA:0000112 gut gut enterocyte decreased amount , abnormal
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 ZFA:0000292 surface structure surface structure quality , abnormal
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 ZFA:0000368 integument integument cell circular , abnormal
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 ZFA:0000435 cranial nerve II cranial nerve II decreased width , abnormal
cranial nerve II has fewer parts of type retinal ganglion cell axon, abnormal
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 ZFA:0001094 whole organism whole organism dead , abnormal
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 ZFA:0001114 head head retracted , abnormal
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 ZFA:0001180 epidermal basal stratum epidermal basal stratum cell proliferation increased occurrence , abnormal
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 ZFA:0001185 periderm periderm cell proliferation increased occurrence , abnormal
periderm cell decreased amount , abnormal
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 ZFA:0001338 intestine intestine morphology , abnormal
intestine smooth , abnormal
intestine microvillus morphology , abnormal
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 ZFA:0009000 cell cell lysosome increased accumulation periderm , abnormal
cell endosome increased accumulation periderm , abnormal
cell vesicle increased accumulation periderm , abnormal
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 ZFA:0009041 peridermal cell peridermal cell morphology , abnormal
peridermal cell spherical , abnormal
peridermal cell apical plasma membrane decreased area , abnormal
peridermal cell cell projection membrane absent , abnormal
peridermal cell decreased size , abnormal
peridermal cell basolateral plasma membrane decreased area , abnormal
peridermal cell increased amount , abnormal
peridermal cell apoptotic process increased occurrence , abnormal
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 ZFA:0009183 epidermal cell epidermal cell morphology , abnormal
epidermal cell spherical , abnormal
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 ZFA:0009269 enterocyte enterocyte morphology , abnormal
enterocyte increased height , abnormal
enterocyte columnar , abnormal
enterocyte lipid droplet decreased amount , abnormal
enterocyte microvillus decreased length , abnormal
enterocyte microvillus mislocalised , abnormal
enterocyte inclusion body increased amount , abnormal
enterocyte secretory granule accumulation enterocyte apical side, abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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