ENSDARG00000062448


Danio rerio

Features
Gene ID: ENSDARG00000062448
  
Biological name :skor1b
  
Synonyms : Q1LXZ9 / SKI family transcriptional corepressor 1b / skor1b
  
Possible biological names infered from orthology : P84550 / Q8BX46 / SKI family transcriptional corepressor 1 / SKOR1
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 19972853
Gene end: 19982654
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000145337
Ensembl peptide - ENSDARP00000148780
Ensembl peptide - ENSDARP00000084767
Ensembl peptide - ENSDARP00000122471
NCBI entrez gene - 567457     See in Manteia.
RefSeq - NM_001045133
RefSeq Peptide - NP_001038598
swissprot - A0A0R4I9E1
swissprot - Q1LXZ9
ZFIN ID - ZDB-GENE-050419-82
Ensembl - ENSDARG00000062448
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SKOR1ENSGALG00000029521Gallus gallus
 SKOR1ENSG00000188779Homo sapiens
 Skor1ENSMUSG00000022245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
skor1a / SKI family transcriptional corepressor 1a / SKOR1* / P84550* / Q8BX46* / SKI family transcriptional corepressor 1*ENSDARG0000006903067
zgc:153395 / SKOR2* / Q2VWA4* / SKI family transcriptional corepressor 2*ENSDARG0000006361426
skia / v-ski avian sarcoma viral oncogene homolog a / SKI* / P12755* / SKI proto-oncogene*ENSDARG0000004215117
skib / v-ski avian sarcoma viral oncogene homolog b / SKI* / P12755* / SKI proto-oncogene*ENSDARG0000000803416
skilb / SKI-like proto-oncogene b / SKIL* / Q60665* / P12757* / SKI-like* / SKI like proto-oncogene*ENSDARG0000002290414
skila / SKI-like proto-oncogene a / SKIL* / Q60665* / P12757* / SKI-like* / SKI like proto-oncogene*ENSDARG0000002393313


Protein motifs (from Interpro)
Interpro ID Name
 IPR003380  SKI/SNO/DAC domain
 IPR009061  Putative DNA-binding domain superfamily
 IPR010919  SAND-like domain superfamily
 IPR014890  c-SKI SMAD4-binding domain
 IPR023216  Transcription regulator SKI/SnoN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IBA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IEA
 biological_processGO:0045596 negative regulation of cell differentiation IBA
 biological_processGO:0048666 neuron development IBA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0046332 SMAD binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr