ENSDARG00000069030


Danio rerio

Features
Gene ID: ENSDARG00000069030
  
Biological name :skor1a
  
Synonyms : SKI family transcriptional corepressor 1a / skor1a
  
Possible biological names infered from orthology : P84550 / Q8BX46 / SKI family transcriptional corepressor 1 / SKOR1
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 33954099
Gene end: 33961551
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000090876
Ensembl peptide - ENSDARP00000157330
NCBI entrez gene - 100170817     See in Manteia.
RefSeq - XM_017356796
swissprot - F1QQH2
ZFIN ID - ZDB-GENE-080722-5
Ensembl - ENSDARG00000069030
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SKOR1ENSGALG00000029521Gallus gallus
 SKOR1ENSG00000188779Homo sapiens
 Skor1ENSMUSG00000022245Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q1LXZ9 / skor1b / SKI family transcriptional corepressor 1b / SKOR1* / Q8BX46* / P84550* / SKI family transcriptional corepressor 1*ENSDARG0000006244867
zgc:153395 / SKOR2* / Q2VWA4* / SKI family transcriptional corepressor 2*ENSDARG0000006361427
skia / v-ski avian sarcoma viral oncogene homolog a / SKI* / P12755* / SKI proto-oncogene*ENSDARG0000004215119
skib / v-ski avian sarcoma viral oncogene homolog b / SKI* / P12755* / SKI proto-oncogene*ENSDARG0000000803417
skila / SKI-like proto-oncogene a / SKIL* / Q60665* / P12757* / SKI-like* / SKI like proto-oncogene*ENSDARG0000002393315
skilb / SKI-like proto-oncogene b / SKIL* / Q60665* / P12757* / SKI-like* / SKI like proto-oncogene*ENSDARG0000002290415


Protein motifs (from Interpro)
Interpro ID Name
 IPR003380  SKI/SNO/DAC domain
 IPR009061  Putative DNA-binding domain superfamily
 IPR010919  SAND-like domain superfamily
 IPR014890  c-SKI SMAD4-binding domain
 IPR023216  Transcription regulator SKI/SnoN


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IBA
 biological_processGO:0030514 negative regulation of BMP signaling pathway IBA
 biological_processGO:0045596 negative regulation of cell differentiation IBA
 biological_processGO:0048666 neuron development IBA
 biological_processGO:1903507 negative regulation of nucleic acid-templated transcription IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0046332 SMAD binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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