ENSDARG00000069074


Danio rerio

Features
Gene ID: ENSDARG00000069074
  
Biological name :cry1ba
  
Synonyms : cry1ba / cryptochrome circadian clock 1ba
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 21225064
Gene end: 21252659
  
Corresponding Affymetrix probe sets: Dr.10433.1.S1_at (Zebrafish Array)   Dr.2518.1.A1_at (Zebrafish Array)   NM_131791_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109829
Ensembl peptide - ENSDARP00000090995
NCBI entrez gene - 573209     See in Manteia.
RefSeq - NM_131791
RefSeq - NM_001313822
RefSeq - XM_005166892
RefSeq Peptide - NP_001300751
RefSeq Peptide - NP_571866
swissprot - Q503J5
swissprot - B0S7X5
ZFIN ID - ZDB-GENE-010426-4
Ensembl - ENSDARG00000069074
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cry1ab / cryptochrome circadian clock 1ab / CRY1* / Q16526* / P97784* / Cryptochrome-1 * / cryptochrome circadian regulator 1*ENSDARG0000001158369
cry1aa / cryptochrome circadian clock 1aa / CRY1* / Q16526* / P97784* / Cryptochrome-1 * / cryptochrome circadian regulator 1*ENSDARG0000004576868
cry1bb / cryptochrome circadian clock 1bbENSDARG0000009113164
cry2 / cryptochrome circadian clock 2 / Q9R194* / Q49AN0* / Cryptochrome-2 * / cryptochrome circadian regulator 2*ENSDARG0000010240359
cry5 / cryptochrome circadian clock 5ENSDARG0000001949844
cry4 / cryptochrome circadian clock 4ENSDARG0000001189041
cry-dash / cryptochrome DASHENSDARG0000000239621
si:ch1073-390k14.1ENSDARG0000008854920


Protein motifs (from Interpro)
Interpro ID Name
 IPR005101  Cryptochrome/DNA photolyase, FAD-binding domain
 IPR006050  DNA photolyase, N-terminal
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009266 response to temperature stimulus IDA
 biological_processGO:0009416 response to light stimulus IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr