ENSDARG00000077536


Danio rerio

Features
Gene ID: ENSDARG00000077536
  
Biological name :snrnp200
  
Synonyms : small nuclear ribonucleoprotein 200 (U5) / snrnp200
  
Possible biological names infered from orthology : O75643 / Q6P4T2 / small nuclear ribonucleoprotein U5 subunit 200 / U5 small nuclear ribonucleoprotein 200 kDa helicase
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 31030613
Gene end: 31053872
  
Corresponding Affymetrix probe sets: Dr.6816.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000098660
swissprot - B0S754
ZFIN ID - ZDB-GENE-081105-64
Ensembl - ENSDARG00000077536
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O75643ENSG00000144028Homo sapiens
 Q6P4T2ENSMUSG00000003660Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ascc3 / activating signal cointegrator 1 complex subunit 3ENSDARG0000008667838
polq / polymerase (DNA directed), theta / O75417* / Q8CGS6* / DNA polymerase theta*ENSDARG0000004462213
helq / helicase, POLQ like / Q2VPA6* / Q8TDG4*ENSDARG000000798188
poln / polymerase (DNA directed) nu / Q7Z5Q5* / DNA polymerase N* / DNA polymerase nu*ENSDARG000001039614


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR001650  Helicase, C-terminal
 IPR003593  AAA+ ATPase domain
 IPR004179  Sec63 domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014756  Immunoglobulin E-set
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001094 whole organism whole organism anterior-posterior axis curved , abnormal
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 ZFA:0001115 trunk trunk shortened , abnormal
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 ZFA:0009275 retinal rod cell retinal rod cell physical object quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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